Ioerror: Can't Prepare for Writing Data (File Write Failed: Time = Mon Apr 29 15:08:41 2019
Log of /trunk/finley
Directory Listing
Revision 6359 - Directory Listing
Modified Wed Jul 6 02:44:18 2016 UTC (5 years, 5 months ago) by caltinay
finley complex dirac.
Revision 6358 - Directory Listing
Modified Wed Jul 6 02:38:10 2016 UTC (5 years, 5 months ago) by caltinay
complex finley 3D PDE systems.
Revision 6357 - Directory Listing
Modified Wed Jul 6 02:24:03 2016 UTC (5 years, 5 months ago) by caltinay
complex finley 2D PDE systems.
Revision 6356 - Directory Listing
Modified Wed Jul 6 01:53:11 2016 UTC (5 years, 5 months ago) by caltinay
complex finley single 3D PDEs.
Revision 6355 - Directory Listing
Modified Wed Jul 6 01:03:10 2016 UTC (5 years, 5 months ago) by caltinay
fix compile without trilinos and add support for 2D complex single PDEs to finley.
Revision 6354 - Directory Listing
Modified Wed Jul 6 00:24:29 2016 UTC (5 years, 5 months ago) by caltinay
first step for complex PDEs in finley.
Revision 6345 - Directory Listing
Modified Mon Jul 4 05:32:05 2016 UTC (5 years, 5 months ago) by jfenwick
Converting minGlobalDataPoint and maxGlobalDataPoint to internal_ That way people should not be using it and we can get rid of #5 Fixed a minor error in an error message.
Revision 6332 - Directory Listing
Modified Thu Jun 30 09:32:40 2016 UTC (5 years, 5 months ago) by caltinay
missed one.
Revision 6331 - Directory Listing
Modified Thu Jun 30 09:31:06 2016 UTC (5 years, 5 months ago) by caltinay
fixing unreachable code warnings issued by nvcc.
Revision 6327 - Directory Listing
Modified Thu Jun 23 21:42:45 2016 UTC (5 years, 5 months ago) by caltinay
tweak solver tolerance for all trilinos order 2 pde's in finley
Revision 6323 - Directory Listing
Modified Thu Jun 23 06:05:23 2016 UTC (5 years, 5 months ago) by caltinay
skip ILUT block tests with trilinos.
Revision 6320 - Directory Listing
Modified Thu Jun 23 05:22:01 2016 UTC (5 years, 5 months ago) by caltinay
i broke it.
Revision 6317 - Directory Listing
Modified Thu Jun 23 04:48:29 2016 UTC (5 years, 5 months ago) by caltinay
parts for feature #3 - automatically choose trilinos if: 1) package == default 2) method == direct 3) trilinos available 4) mpi size > 1
Revision 6316 - Directory Listing
Modified Thu Jun 23 04:25:56 2016 UTC (5 years, 5 months ago) by caltinay
update tests, we now support pde systems with trilinos.
Revision 6312 - Directory Listing
Modified Tue Jun 21 06:51:27 2016 UTC (5 years, 5 months ago) by caltinay
re-enable MueLu with long-index builds. There are only a few tweaks required in Trilinos which I have done locally so if the tests pass we can go from there.
Revision 6304 - Directory Listing
Modified Sat Jun 18 11:00:33 2016 UTC (5 years, 5 months ago) by caltinay
tweak.
Revision 6298 - Directory Listing
Modified Fri Jun 17 04:00:35 2016 UTC (5 years, 5 months ago) by caltinay
type fixes in debug mode and savanna lib reference fix.
Revision 6291 - Directory Listing
Modified Thu Jun 16 05:47:55 2016 UTC (5 years, 5 months ago) by caltinay
advertise if escript was built with long indices as this means we can't run MueLu (AMG) tests. Increased number of GS sweeps for a test that hangs again.
Revision 6289 - Directory Listing
Modified Wed Jun 15 22:43:24 2016 UTC (5 years, 6 months ago) by caltinay
ILUT does not appear to work with Trilinos block matrices
Revision 6282 - Directory Listing
Modified Tue Jun 14 04:54:01 2016 UTC (5 years, 6 months ago) by caltinay
changes to finley tests. See last few commits for details.
Revision 6279 - Directory Listing
Modified Mon Jun 13 07:05:21 2016 UTC (5 years, 6 months ago) by caltinay
this should fix most of the remaining trilinos test failures.
Revision 6278 - Directory Listing
Modified Mon Jun 13 06:39:59 2016 UTC (5 years, 6 months ago) by caltinay
trilinos-based interpolation from DOF->ReducedNodes in finley.
Revision 6277 - Directory Listing
Modified Mon Jun 13 06:18:44 2016 UTC (5 years, 6 months ago) by caltinay
implemented trilinos-based interpolation from red. DOF -> reducedNodes in finley. Replaced some assertTrue's by more specific tests for more useful output.
Revision 6257 - Directory Listing
Modified Fri Jun 3 00:30:37 2016 UTC (5 years, 6 months ago) by caltinay
s/assertEquals/assertEqual/g since the former is deprecated.
Revision 6236 - Directory Listing
Modified Wed Jun 1 01:09:03 2016 UTC (5 years, 6 months ago) by caltinay
fixing coverity-detected leaks CID 115857,115858.
Revision 6235 - Directory Listing
Modified Wed Jun 1 01:05:29 2016 UTC (5 years, 6 months ago) by caltinay
fixing coverity-detected leaks CID 115859,115860,115861.
Revision 6234 - Directory Listing
Modified Wed Jun 1 01:00:21 2016 UTC (5 years, 6 months ago) by caltinay
fixing coverity-detected leaks CID 115863,115864,115865.
Revision 6219 - Directory Listing
Modified Wed May 25 07:00:28 2016 UTC (5 years, 6 months ago) by caltinay
skip paso test in finley without paso and fix assemble parameter issue without paso.
Revision 6218 - Directory Listing
Modified Mon May 23 13:42:19 2016 UTC (5 years, 6 months ago) by caltinay
fixed typo.
Revision 6216 - Directory Listing
Modified Mon May 23 06:52:32 2016 UTC (5 years, 6 months ago) by caltinay
trying to support 2nd order elements in finley with trilinos. WIP
Revision 6215 - Directory Listing
Modified Mon May 23 02:58:03 2016 UTC (5 years, 6 months ago) by caltinay
trilinos-based DOF->node interpolation in finley. Not complete yet.
Revision 6212 - Directory Listing
Modified Tue May 17 00:52:16 2016 UTC (5 years, 6 months ago) by caltinay
typo with trilinos.
Revision 6211 - Directory Listing
Modified Mon May 16 11:48:02 2016 UTC (5 years, 7 months ago) by caltinay
guard slave-only functions in readgmsh to avoid unused func warnings in non-MPI builds.
Revision 6210 - Directory Listing
Modified Mon May 16 08:42:05 2016 UTC (5 years, 7 months ago) by caltinay
more test adjustments.
Revision 6209 - Directory Listing
Modified Mon May 16 04:32:21 2016 UTC (5 years, 7 months ago) by caltinay
fixed typo.
Revision 6207 - Directory Listing
Modified Mon May 16 00:49:48 2016 UTC (5 years, 7 months ago) by caltinay
merged finley Mesh and MeshAdapter into FinleyDomain.
Revision 6204 - Directory Listing
Modified Thu May 12 23:05:56 2016 UTC (5 years, 7 months ago) by caltinay
fixed types for index type long.
Revision 6197 - Directory Listing
Modified Fri Apr 29 14:02:32 2016 UTC (5 years, 7 months ago) by caltinay
moved Distribution struct to escript and updated domains accordingly. We can now build the full escript suite without paso (-:
Revision 6196 - Directory Listing
Modified Thu Apr 28 03:38:25 2016 UTC (5 years, 7 months ago) by caltinay
It looks like there is an issue with paso's GAUSS-SEIDEL and parallel domains where some ranks have no element, or similar(?) Getting around this in the unit tests now by optimizing domain distribution, obviously that only works with parmetis. Alternative would be to use slightly larger test domains.
Revision 6182 - Directory Listing
Modified Tue Apr 26 06:31:51 2016 UTC (5 years, 7 months ago) by caltinay
rather than skipping pde system tests with trilinos we now expect failures, which actually translate to quite a few unexpected successes. There is still a threading issue somewhere...
Revision 6175 - Directory Listing
Modified Fri Apr 15 06:59:14 2016 UTC (5 years, 8 months ago) by caltinay
make sure to copy python lists rather than adding on or PrependUnique is useless.
Revision 6174 - Directory Listing
Modified Fri Apr 15 03:41:03 2016 UTC (5 years, 8 months ago) by caltinay
Some reorganisation of EscriptParams and related changes. We now distinguish between modifiable parameters and build features. To interrogate the latter use: escript::hasFeature() [ python: escript.hasFeature() ] and escript::listFeatures() [ python: escript.listFeatures() ] I have decided to add specific getters for the remaining few parameters to avoid the penalty of string comparisons and to remove the wealth of friend declarations with Data* classes. Also made some changes in SConstruct to make sure we set *all* preprocessor directives *before* building anything. Still to do is dealing with checks for direct solver and gmsh. The latter needs to be a runtime check rather than a compile time check.
Revision 6173 - Directory Listing
Modified Thu Apr 14 05:56:55 2016 UTC (5 years, 8 months ago) by caltinay
moved reference to JMPI down to Coupler.
Revision 6172 - Directory Listing
Modified Thu Apr 14 05:15:27 2016 UTC (5 years, 8 months ago) by caltinay
type change in paso.
Revision 6156 - Directory Listing
Modified Fri Apr 8 04:39:55 2016 UTC (5 years, 8 months ago) by caltinay
index type fix.
Revision 6148 - Directory Listing
Modified Wed Apr 6 10:28:13 2016 UTC (5 years, 8 months ago) by caltinay
fix savanna options file and make sure libraries get added once only.
Revision 6145 - Directory Listing
Modified Wed Apr 6 06:28:57 2016 UTC (5 years, 8 months ago) by caltinay
now refraining from adding all libraries to all targets. So we don't link unnecessary libraries, e.g. escript does not need parmetis etc...
Revision 6144 - Directory Listing
Modified Wed Apr 6 05:25:13 2016 UTC (5 years, 8 months ago) by caltinay
last round of namespacing defines.
Revision 6141 - Directory Listing
Modified Wed Apr 6 03:51:30 2016 UTC (5 years, 8 months ago) by caltinay
more namespacing of defines.
Revision 6130 - Directory Listing
Modified Tue Apr 5 07:05:01 2016 UTC (5 years, 8 months ago) by caltinay
more index_t != int fixes in dudley and finley. Both compile now with index type long. Weipa doesn't.
Revision 6124 - Directory Listing
Modified Tue Apr 5 03:23:12 2016 UTC (5 years, 8 months ago) by caltinay
Fixing python module build on OS X. Added PythonModule builder so we do this generically now.
Revision 6120 - Directory Listing
Modified Mon Apr 4 01:33:51 2016 UTC (5 years, 8 months ago) by caltinay
guilty as charged.
Revision 6119 - Directory Listing
Modified Sun Apr 3 23:36:59 2016 UTC (5 years, 8 months ago) by caltinay
merging trilinos branch to trunk. We can now build with trilinos and use it instead of paso for single PDEs. There are some more things to be done...
Revision 6112 - Directory Listing
Modified Thu Mar 31 09:40:10 2016 UTC (5 years, 8 months ago) by jfenwick
Relicense all the things!
Revision 6078 - Directory Listing
Modified Mon Mar 21 06:02:29 2016 UTC (5 years, 8 months ago) by caltinay
please keep third-party includes after our own to avoid reintroducing the "python has to be first" issue.
Revision 6077 - Directory Listing
Modified Mon Mar 21 06:00:21 2016 UTC (5 years, 8 months ago) by jfenwick
Compile error fix. Not sure why my system didn't pick it up.
Revision 6076 - Directory Listing
Modified Fri Mar 18 12:06:46 2016 UTC (5 years, 8 months ago) by jfenwick
Fixing some namespaces and includes
Revision 6034 - Directory Listing
Modified Wed Mar 9 00:37:57 2016 UTC (5 years, 9 months ago) by caltinay
a few changes to GroupTest / utest: GroupTest class now takes a name parameter that is used as (shell) function name in utest for the test group. By default all tests are run as before but one can now do: ./utest.sh build '-t2' escriptcpp to only run the escript c++ unit tests. Also tweaked a couple things so utest.sh does now work with dash.
Revision 6032 - Directory Listing
Modified Tue Mar 8 10:02:26 2016 UTC (5 years, 9 months ago) by caltinay
hmm, I thought we're using globs...
Revision 6031 - Directory Listing
Modified Tue Mar 8 06:27:14 2016 UTC (5 years, 9 months ago) by caltinay
added a generic baseclass for PDE solver tests which is used by all domains. Renamed test files to prepare for Trilinos merge at some point.
Revision 6027 - Directory Listing
Modified Mon Mar 7 03:01:22 2016 UTC (5 years, 9 months ago) by caltinay
fix for serial.
Revision 6026 - Directory Listing
Modified Mon Mar 7 01:58:51 2016 UTC (5 years, 9 months ago) by caltinay
Fixes #361 - bug in readGmsh + MPI reading nodes Also fixes another related issue reading elements with a certain number of ranks
Revision 6017 - Directory Listing
Modified Thu Mar 3 03:06:42 2016 UTC (5 years, 9 months ago) by caltinay
fixing a few more POSIX_C redefinition warnings.
Revision 6013 - Directory Listing
Modified Wed Mar 2 06:16:47 2016 UTC (5 years, 9 months ago) by caltinay
Incompressible Flow test case fails for NE > ~24 independent on number of ranks, might be a tolerance issue but I'm patching the test for now.
Revision 6006 - Directory Listing
Modified Wed Mar 2 01:58:31 2016 UTC (5 years, 9 months ago) by caltinay
Fixed a corner case in finley where some ranks have no reduced DOFs. This came to light when bumping the number of testing ranks to 20 on Savanna.
Revision 6005 - Directory Listing
Modified Wed Mar 2 00:26:33 2016 UTC (5 years, 9 months ago) by caltinay
fixed another current exception hang.
Revision 6003 - Directory Listing
Modified Tue Mar 1 23:33:52 2016 UTC (5 years, 9 months ago) by caltinay
removed useless include.
Revision 6001 - Directory Listing
Modified Tue Mar 1 05:01:49 2016 UTC (5 years, 9 months ago) by caltinay
Bye bye esysUtils. Also removed first.h as escript/DataTypes.h is now required everywhere and fulfills that role by including a boost python header first.
Revision 6000 - Directory Listing
Modified Tue Mar 1 00:24:43 2016 UTC (5 years, 9 months ago) by caltinay
a few more include rearrangements.
Revision 5998 - Directory Listing
Modified Mon Feb 29 08:57:28 2016 UTC (5 years, 9 months ago) by caltinay
removed some macros and moved index.h to escript.
Revision 5997 - Directory Listing
Modified Mon Feb 29 07:24:47 2016 UTC (5 years, 9 months ago) by caltinay
moved esys MPI to escript.
Revision 5996 - Directory Listing
Modified Mon Feb 29 05:39:02 2016 UTC (5 years, 9 months ago) by caltinay
1) finally put dudley into its own namespace 2) replaced all Esys*Error calls by exceptions in dudley and paso
Revision 5994 - Directory Listing
Modified Sun Feb 28 10:20:49 2016 UTC (5 years, 9 months ago) by caltinay
update 2.
Revision 5993 - Directory Listing
Modified Sun Feb 28 10:19:30 2016 UTC (5 years, 9 months ago) by caltinay
update.
Revision 5990 - Directory Listing
Modified Fri Feb 26 07:23:48 2016 UTC (5 years, 9 months ago) by caltinay
small fix.
Revision 5988 - Directory Listing
Modified Fri Feb 26 06:59:38 2016 UTC (5 years, 9 months ago) by caltinay
eliminated Esys_setError() et al from finley. We do have the issue of potentially throwing exceptions in some ranks and not others but I'd claim that was the case before in various places.
Revision 5984 - Directory Listing
Modified Fri Feb 26 02:00:45 2016 UTC (5 years, 9 months ago) by caltinay
Added IOError. Also started replacing some 'setError()' calls by exception throws as the latest test failures are bogus because an error was set but never checked for.
Revision 5981 - Directory Listing
Modified Thu Feb 25 07:12:18 2016 UTC (5 years, 9 months ago) by caltinay
fixed a few exception types in tests.
Revision 5972 - Directory Listing
Modified Wed Feb 24 04:05:30 2016 UTC (5 years, 9 months ago) by caltinay
Major rework of our exceptions. We now have specific AssertException NotImplementedError ValueError which translate to the corresponding python exception type. I have gone through a few places and replaced things but not everywhere.
Revision 5967 - Directory Listing
Modified Tue Feb 23 05:46:09 2016 UTC (5 years, 9 months ago) by caltinay
found a few instances of MPI_COMM_WORLD and squashed them. Added member to AbstractDomain that returns a JMPI so we ensure all domains support that. Moved appendRankToFilename into class.
Revision 5966 - Directory Listing
Modified Tue Feb 23 03:31:17 2016 UTC (5 years, 9 months ago) by caltinay
fixed serial compile and moved mod_rank into class.
Revision 5965 - Directory Listing
Modified Tue Feb 23 01:45:40 2016 UTC (5 years, 9 months ago) by caltinay
removed more useless #defines.
Revision 5962 - Directory Listing
Modified Mon Feb 22 06:46:23 2016 UTC (5 years, 9 months ago) by caltinay
removed types.h and adapted quite a bit of code...
Revision 5959 - Directory Listing
Modified Mon Feb 22 01:32:59 2016 UTC (5 years, 9 months ago) by caltinay
removed a few macros.
Revision 5958 - Directory Listing
Modified Mon Feb 22 01:05:32 2016 UTC (5 years, 9 months ago) by caltinay
moved random to escript.
Revision 5954 - Directory Listing
Modified Sun Feb 21 22:40:27 2016 UTC (5 years, 9 months ago) by caltinay
moved exception translators to escript.
Revision 5952 - Directory Listing
Modified Fri Feb 19 07:27:31 2016 UTC (5 years, 9 months ago) by caltinay
bye bye blocktimer. I just tried to use it and the things it reports were plain wrong. No wonder given the few places it was ever put in. Also, it seems it has caused more problems than helped over the years (see svn log). If we are ever keen to time our code again we might as well do it properly using PAPI or similar...
Revision 5950 - Directory Listing
Modified Fri Feb 19 06:49:07 2016 UTC (5 years, 9 months ago) by caltinay
metis kindly put its own real_t typedef in the global namespace so we need to be careful not to clash with that :-(
Revision 5948 - Directory Listing
Modified Fri Feb 19 05:02:39 2016 UTC (5 years, 9 months ago) by caltinay
moved index_t & dim_t into escript::DataTypes and updated files accordingly. Dudley needs a full sweep of namespacing at some not-distant future.
Revision 5946 - Directory Listing
Modified Fri Feb 19 03:02:56 2016 UTC (5 years, 9 months ago) by caltinay
some baby steps towards removing esysUtils and making escript our main library/module. Added real_t_max() and real_t_eps() functions.
Revision 5938 - Directory Listing
Modified Thu Feb 18 06:30:35 2016 UTC (5 years, 9 months ago) by jfenwick
Merging from 5937 on the complex branch Some parts of complex work but all of it is not unit tested and it is certainly not feature complete (I haven't put any time into dealing with subworld for complex). The other important aspect of this merge is that c++11 is now required to build escript.
Revision 5929 - Directory Listing
Modified Wed Feb 17 07:40:00 2016 UTC (5 years, 9 months ago) by caltinay
Merged pasowrap into paso. Unfortunately, this required touching quite a few files. build_shared now defaults to true but will likely disappear altogether once esysUtils disappears.
Revision 5863 - Directory Listing
Modified Wed Jan 13 02:25:48 2016 UTC (5 years, 11 months ago) by jfenwick
Copyright dates updated. \version for doxygen to read
Revision 5857 - Directory Listing
Modified Tue Dec 15 07:30:34 2015 UTC (6 years ago) by caltinay
hmm, this change was necessary on Trusty for some reason, it shouldn't break other builds...
Revision 5821 - Directory Listing
Modified Fri Oct 16 00:59:07 2015 UTC (6 years, 2 months ago) by caltinay
Type fix for parmetis with long indices
Revision 5810 - Directory Listing
Modified Fri Sep 25 06:17:26 2015 UTC (6 years, 2 months ago) by caltinay
DOF and reduced DOF can now be passed to ownSample() in Finley.
Revision 5799 - Directory Listing
Modified Tue Sep 22 06:54:28 2015 UTC (6 years, 2 months ago) by gross
fix for Bug #326
Revision 5787 - Directory Listing
Modified Fri Sep 4 06:00:20 2015 UTC (6 years, 3 months ago) by caltinay
64-bit index fixes in finley.
Revision 5781 - Directory Listing
Modified Mon Aug 31 05:52:20 2015 UTC (6 years, 3 months ago) by caltinay
made finley::Mesh::write long index compatible.
Revision 5736 - Directory Listing
Modified Fri Jul 10 00:34:03 2015 UTC (6 years, 5 months ago) by sshaw
made namespace use consistent between header and cpp to help poor doxygen find the right functions
Revision 5714 - Directory Listing
Modified Wed Jul 1 03:57:45 2015 UTC (6 years, 5 months ago) by sshaw
fix for build failures on x86 machines due to underlying type of size_t being different for a format string
Revision 5713 - Directory Listing
Modified Tue Jun 30 05:54:14 2015 UTC (6 years, 5 months ago) by sshaw
cleanup of finley test imports and docstrings
Revision 5708 - Directory Listing
Modified Mon Jun 29 05:25:51 2015 UTC (6 years, 5 months ago) by caltinay
index fixes and some code cleanup in finley. Introduced index_size attribute to finley dump (netCDF) files.
Revision 5707 - Directory Listing
Modified Mon Jun 29 03:59:06 2015 UTC (6 years, 5 months ago) by sshaw
adding copyright headers to files without copyright info, moved header to top of file in some cases where it wasn't
Revision 5706 - Directory Listing
Modified Mon Jun 29 03:41:36 2015 UTC (6 years, 5 months ago) by sshaw
all python files now force use of python3 prints and division syntax to stop sneaky errors appearing in py3 environs
Revision 5705 - Directory Listing
Modified Mon Jun 29 01:07:07 2015 UTC (6 years, 5 months ago) by sshaw
no more tab characters in python files
Revision 5703 - Directory Listing
Modified Mon Jun 29 00:56:26 2015 UTC (6 years, 5 months ago) by jfenwick
Adding/fixing split world tests for domains except speckley
Revision 5702 - Directory Listing
Modified Mon Jun 29 00:05:03 2015 UTC (6 years, 5 months ago) by sshaw
finley util tests with contact now test properly for multi-process and skip if so
Revision 5701 - Directory Listing
Modified Fri Jun 26 05:48:11 2015 UTC (6 years, 5 months ago) by caltinay
more work towards long indices.
Revision 5695 - Directory Listing
Modified Fri Jun 26 03:28:21 2015 UTC (6 years, 5 months ago) by sshaw
some testfile cleanup: python3ifying, unskipping, and less '= False and True'
Revision 5694 - Directory Listing
Modified Fri Jun 26 02:10:39 2015 UTC (6 years, 5 months ago) by caltinay
index type fixes.
Revision 5692 - Directory Listing
Modified Thu Jun 25 06:16:17 2015 UTC (6 years, 5 months ago) by caltinay
Work to get finley compiling with long indices.
Revision 5686 - Directory Listing
Modified Wed Jun 24 04:54:08 2015 UTC (6 years, 5 months ago) by sshaw
updated comment in gmsh reader to explain the 'unsure why'
Revision 5677 - Directory Listing
Modified Mon Jun 22 08:05:28 2015 UTC (6 years, 5 months ago) by jduplessis
brick and rectangle documentations updates
Revision 5641 - Directory Listing
Modified Thu Jun 11 05:59:46 2015 UTC (6 years, 6 months ago) by sshaw
adjusted dict->list conversions to be deterministic under python3 (fixes ranks operating on elements in different orders)
Revision 5593 - Directory Listing
Modified Fri Apr 24 01:36:26 2015 UTC (6 years, 7 months ago) by jfenwick
Fixing institution name to comply with policy
Revision 5589 - Directory Listing
Modified Wed Apr 22 03:13:44 2015 UTC (6 years, 7 months ago) by jfenwick
Changes brought across from the debian preparation branch.
Revision 5539 - Directory Listing
Modified Tue Mar 17 05:56:07 2015 UTC (6 years, 9 months ago) by jfenwick
Made the docstrings for finley and dudley wrappers echo the docstrings from the c++drivers. Removed some old commented out boost.
Revision 5527 - Directory Listing
Modified Wed Mar 11 03:48:13 2015 UTC (6 years, 9 months ago) by sshaw
test dependencies now use desired build path as check
Revision 5520 - Directory Listing
Modified Tue Mar 10 05:34:14 2015 UTC (6 years, 9 months ago) by caltinay
Fixing parmetis options. We've been passing an array that's too small according to current parmetis doco.
Revision 5506 - Directory Listing
Modified Thu Mar 5 04:14:49 2015 UTC (6 years, 9 months ago) by caltinay
Avoid unnecessary allocs/frees in parallel region which caused hangs using many threads and intel OMP on savanna (probably due to a bug in the intel library or glibc).
Revision 5496 - Directory Listing
Modified Thu Feb 26 00:36:29 2015 UTC (6 years, 9 months ago) by sshaw
fixing a missing build dependency of pythonMPI existing before individual tests are run
Revision 5494 - Directory Listing
Modified Tue Feb 24 23:18:59 2015 UTC (6 years, 9 months ago) by jduplessis
improved error checking in gmshreader suite
Revision 5481 - Directory Listing
Modified Wed Feb 18 05:07:25 2015 UTC (6 years, 9 months ago) by sshaw
fixing a memory leak in the new MPI wrapper, along with some comment updating to satisfy doxygen a bit better
Revision 5475 - Directory Listing
Modified Tue Feb 17 06:08:16 2015 UTC (6 years, 9 months ago) by sshaw
fixed gmsh named tags, along with a little more cleanup
Revision 5469 - Directory Listing
Modified Mon Feb 16 04:03:24 2015 UTC (6 years, 9 months ago) by jfenwick
fixes I forgot to commit
Revision 5468 - Directory Listing
Modified Mon Feb 16 03:52:35 2015 UTC (6 years, 9 months ago) by sshaw
and that concludes our story of how the gmsh ruined christmas
Revision 5466 - Directory Listing
Modified Mon Feb 16 00:07:23 2015 UTC (6 years, 9 months ago) by sshaw
correcting readGmsh failures with older version meshes
Revision 5465 - Directory Listing
Modified Mon Feb 16 00:03:05 2015 UTC (6 years, 9 months ago) by jfenwick
We now have an arena where any headers which insist on being first because they do bad things, can battle to the death. esysutils/first.h should only be included in .cpp files. #define the macros for the features you need in that .cpp For this to work, any such claims to primacy must be resolved in first.h, so please don't try to hack pretenders to the throne into the include hierachy. Next, will be removing some older attempts at the same thing.
Revision 5464 - Directory Listing
Modified Sat Feb 14 00:25:03 2015 UTC (6 years, 10 months ago) by jfenwick
Fix for python compile warnings
Revision 5463 - Directory Listing
Modified Fri Feb 13 06:54:08 2015 UTC (6 years, 10 months ago) by sshaw
fixing uninitialised int that really was initialised before use
Revision 5462 - Directory Listing
Modified Fri Feb 13 06:30:33 2015 UTC (6 years, 10 months ago) by sshaw
a more improved readGmsh for less awkward MPI silences
Revision 5461 - Directory Listing
Modified Fri Feb 13 04:37:51 2015 UTC (6 years, 10 months ago) by jfenwick
Passes some tests. Still has bug
Revision 5448 - Directory Listing
Modified Fri Feb 6 05:31:37 2015 UTC (6 years, 10 months ago) by jfenwick
Updating all the dates
Revision 5429 - Directory Listing
Modified Fri Jan 23 00:19:43 2015 UTC (6 years, 10 months ago) by caltinay
Looks like debian has a very old version of parmetis so deal with that.
Revision 5428 - Directory Listing
Modified Thu Jan 22 23:16:00 2015 UTC (6 years, 10 months ago) by caltinay
Fixed types for parmetis.
Revision 5425 - Directory Listing
Modified Wed Jan 21 06:17:21 2015 UTC (6 years, 10 months ago) by jfenwick
Fix build error and add comment
Revision 5419 - Directory Listing
Modified Wed Jan 14 09:14:05 2015 UTC (6 years, 11 months ago) by jfenwick
Make tests write to the correct directories
Revision 5407 - Directory Listing
Modified Thu Dec 18 02:48:24 2014 UTC (6 years, 11 months ago) by jfenwick
release changes
Revision 5372 - Directory Listing
Modified Mon Dec 15 05:48:55 2014 UTC (7 years ago) by sshaw
removing parallel section on map inserts
Revision 5350 - Directory Listing
Modified Fri Dec 12 03:00:37 2014 UTC (7 years ago) by sshaw
updating reference meshes to take into account first-tag method
Revision 5349 - Directory Listing
Modified Fri Dec 12 01:32:05 2014 UTC (7 years ago) by sshaw
more informative skip messages, first tagged element applies for readgmsh instead of last
Revision 5346 - Directory Listing
Modified Thu Dec 11 23:55:13 2014 UTC (7 years ago) by sshaw
fixing more cases of indexing empty vectors
Revision 5345 - Directory Listing
Modified Thu Dec 11 23:25:08 2014 UTC (7 years ago) by sshaw
updating reference meshes
Revision 5344 - Directory Listing
Modified Thu Dec 11 23:01:16 2014 UTC (7 years ago) by sshaw
fixing non-mpi builds
Revision 5343 - Directory Listing
Modified Thu Dec 11 08:21:01 2014 UTC (7 years ago) by sshaw
some fixes for the new node tagging from gmshreader
Revision 5342 - Directory Listing
Modified Thu Dec 11 03:56:23 2014 UTC (7 years ago) by sshaw
fixes to readGmsh off-by-one
Revision 5341 - Directory Listing
Modified Thu Dec 11 03:20:36 2014 UTC (7 years ago) by sshaw
fixing some indexing into empty vectors, related to #291
Revision 5340 - Directory Listing
Modified Thu Dec 11 00:24:58 2014 UTC (7 years ago) by jduplessis
updated tags in fly files
Revision 5338 - Directory Listing
Modified Wed Dec 10 07:03:24 2014 UTC (7 years ago) by sshaw
fix for gmsh permissive use of scoped i
Revision 5337 - Directory Listing
Modified Wed Dec 10 05:58:33 2014 UTC (7 years ago) by jduplessis
added a nodeid map so that node id's can be used to index the node arrays such as the tag array
Revision 5334 - Directory Listing
Modified Wed Dec 10 04:10:41 2014 UTC (7 years ago) by sshaw
more finley test cleanup
Revision 5333 - Directory Listing
Modified Wed Dec 10 02:53:03 2014 UTC (7 years ago) by sshaw
some more readGmsh cleaning
Revision 5332 - Directory Listing
Modified Wed Dec 10 01:49:15 2014 UTC (7 years ago) by sshaw
readability cleanup on readGmsh
Revision 5328 - Directory Listing
Modified Tue Dec 9 06:34:08 2014 UTC (7 years ago) by sshaw
removing unused test file
Revision 5327 - Directory Listing
Modified Tue Dec 9 06:32:11 2014 UTC (7 years ago) by jduplessis
fixed continuousFunction mesh tagging
Revision 5325 - Directory Listing
Modified Tue Dec 9 04:53:14 2014 UTC (7 years ago) by sshaw
9000 less tests are skipped, partly removing skips, partly removing duplicate test file
Revision 5319 - Directory Listing
Modified Tue Dec 9 00:58:32 2014 UTC (7 years ago) by jduplessis
small changes to indentation etc
Revision 5303 - Directory Listing
Modified Thu Dec 4 06:17:11 2014 UTC (7 years ago) by jfenwick
Changes to keep clang happy
Revision 5224 - Directory Listing
Modified Mon Oct 27 01:23:31 2014 UTC (7 years, 1 month ago) by jduplessis
fixed issue with point elements
Revision 5222 - Directory Listing
Modified Fri Oct 24 04:29:46 2014 UTC (7 years, 1 month ago) by jduplessis
getNumberOfDataPoints is a per rank operation
Revision 5219 - Directory Listing
Modified Thu Oct 23 03:47:27 2014 UTC (7 years, 1 month ago) by jduplessis
should now work with mpi
Revision 5217 - Directory Listing
Modified Thu Oct 23 00:18:44 2014 UTC (7 years, 1 month ago) by jduplessis
further debug removings
Revision 5211 - Directory Listing
Modified Wed Oct 22 04:26:03 2014 UTC (7 years, 1 month ago) by sshaw
fixed infinite loop in gmsh reader
Revision 5208 - Directory Listing
Modified Tue Oct 21 03:43:14 2014 UTC (7 years, 1 month ago) by jduplessis
fixed may be unitialised error reworked code to add more openMpness
Revision 5207 - Directory Listing
Modified Tue Oct 21 00:51:22 2014 UTC (7 years, 1 month ago) by jduplessis
fixed compiler errors
Revision 5206 - Directory Listing
Modified Mon Oct 20 06:59:57 2014 UTC (7 years, 1 month ago) by jduplessis
working mpi version of readGmsh. tweaks and unit tests to come
Revision 5198 - Directory Listing
Modified Wed Oct 8 08:28:35 2014 UTC (7 years, 2 months ago) by caltinay
fixed longstanding lazy test failures due to calling getDataRO() without resolving Data object first (only in finley).
Revision 5191 - Directory Listing
Modified Thu Oct 2 04:40:20 2014 UTC (7 years, 2 months ago) by sshaw
adding speckley to ripley interpolation (single process only)
Revision 5148 - Directory Listing
Modified Mon Sep 15 01:25:23 2014 UTC (7 years, 3 months ago) by caltinay
Merging ripley diagonal storage + CUDA support into trunk. Options file version has been incremented due to new options 'cuda' and 'nvccflags'.
Revision 5121 - Directory Listing
Modified Wed Aug 20 10:32:40 2014 UTC (7 years, 3 months ago) by caltinay
Made more methods pure virtual in AbstractDomain and moved the generic implementation into NullDomain. Made TestDomain derive from NullDomain to inherit the methods.
Revision 5108 - Directory Listing
Modified Fri Aug 1 04:37:45 2014 UTC (7 years, 4 months ago) by jduplessis
removing renamed tests
Revision 5105 - Directory Listing
Modified Mon Jul 21 10:08:43 2014 UTC (7 years, 4 months ago) by caltinay
fix for parmetis-enabled build
Revision 5104 - Directory Listing
Modified Mon Jul 21 07:47:55 2014 UTC (7 years, 4 months ago) by caltinay
Fixed a threading performance issue in finley/dudley by preallocating chunk in vector and using dynamic arrays directly for parallel region.
Revision 5097 - Directory Listing
Modified Sun Jul 13 01:02:24 2014 UTC (7 years, 5 months ago) by caltinay
Fixed undefined behaviour when indexing empty stl containers to pass pointers (i.e. &vec[0]).
Revision 5090 - Directory Listing
Modified Wed Jul 2 05:14:11 2014 UTC (7 years, 5 months ago) by jduplessis
tests for replace and has NaN
Revision 5061 - Directory Listing
Modified Fri Jun 20 04:10:59 2014 UTC (7 years, 5 months ago) by jfenwick
Added descriptive information to functionspace names
Revision 5060 - Directory Listing
Modified Fri Jun 20 03:29:11 2014 UTC (7 years, 5 months ago) by sshaw
more reporting of previously silently skipped/passing tests
Revision 5059 - Directory Listing
Modified Fri Jun 20 03:10:19 2014 UTC (7 years, 5 months ago) by sshaw
more test renames, more marking non-test classes, fixed broken test in run_xml
Revision 5058 - Directory Listing
Modified Fri Jun 20 02:03:28 2014 UTC (7 years, 5 months ago) by sshaw
more test renames, marking some that look wrongly named as subclass required
Revision 5043 - Directory Listing
Modified Thu Jun 12 07:07:27 2014 UTC (7 years, 6 months ago) by jduplessis
skip gmshnamedtags for mpi
Revision 5039 - Directory Listing
Modified Thu Jun 12 05:10:38 2014 UTC (7 years, 6 months ago) by caltinay
compiler help
Revision 5037 - Directory Listing
Modified Thu Jun 12 04:39:23 2014 UTC (7 years, 6 months ago) by caltinay
more on CAP.
Revision 5033 - Directory Listing
Modified Thu Jun 12 01:04:42 2014 UTC (7 years, 6 months ago) by jduplessis
test file for named tags
Revision 5032 - Directory Listing
Modified Thu Jun 12 01:03:00 2014 UTC (7 years, 6 months ago) by jduplessis
added test for named tags
Revision 5030 - Directory Listing
Modified Thu Jun 12 00:37:33 2014 UTC (7 years, 6 months ago) by sshaw
more missing tests added
Revision 5029 - Directory Listing
Modified Wed Jun 11 23:52:36 2014 UTC (7 years, 6 months ago) by caltinay
Continuing the compiler assistance package...
Revision 5026 - Directory Listing
Modified Wed Jun 11 06:07:03 2014 UTC (7 years, 6 months ago) by jduplessis
reading physical names should now work properly
Revision 5017 - Directory Listing
Modified Tue Jun 10 02:16:18 2014 UTC (7 years, 6 months ago) by sshaw
scons now runs tests via a testrunner to collect lists of skipped tests in build/ (examples have their own builder since they aren't unit tests) fixed hessian regularisation tests falling over by adding a shortcircuit optional arg that returns the pde, not the solution added missing/omitted tests back into scons tests
Revision 4994 - Directory Listing
Modified Thu Jun 5 03:04:57 2014 UTC (7 years, 6 months ago) by jfenwick
Ensure isnan calls the c++ version except on windows compilers
Revision 4986 - Directory Listing
Modified Tue Jun 3 03:09:14 2014 UTC (7 years, 6 months ago) by sshaw
adding skips for those tests not previously tested and which will need checking
Revision 4984 - Directory Listing
Modified Mon Jun 2 02:50:34 2014 UTC (7 years, 6 months ago) by sshaw
revamping testrunners, now uses automated discovery and allows running specific tests without modifying files (see escriptcore/py_src/testing.py for more info/examples)
Revision 4983 - Directory Listing
Modified Mon Jun 2 02:32:23 2014 UTC (7 years, 6 months ago) by sshaw
removing missing/leftover test files from test list
Revision 4982 - Directory Listing
Modified Mon Jun 2 00:41:30 2014 UTC (7 years, 6 months ago) by sshaw
removing run_utilOnFinley3.py as it is a duplicate of run_utilOnFinley.py
Revision 4968 - Directory Listing
Modified Mon May 26 04:20:22 2014 UTC (7 years, 6 months ago) by jfenwick
One more time for the dummies
Revision 4966 - Directory Listing
Modified Mon May 26 02:55:33 2014 UTC (7 years, 6 months ago) by jfenwick
Dealing with non-determinism. We hope.
Revision 4965 - Directory Listing
Modified Fri May 23 22:07:32 2014 UTC (7 years, 6 months ago) by jfenwick
Try to fix this for MPI again
Revision 4963 - Directory Listing
Modified Fri May 23 05:12:40 2014 UTC (7 years, 6 months ago) by jfenwick
Removed JMPI from ScriptMPI.cpp. Changed options file to build shared libraries. Fixed error in unit tests
Revision 4962 - Directory Listing
Modified Fri May 23 02:53:00 2014 UTC (7 years, 6 months ago) by jfenwick
Tests for adding dirac points. There are no tests for what dirac points appear on which ranks.
Revision 4945 - Directory Listing
Modified Thu May 15 09:07:06 2014 UTC (7 years, 7 months ago) by jfenwick
Untested code for adding dirac points to finley domains. Still to do: load(), unit tests
Revision 4938 - Directory Listing
Modified Wed May 14 01:13:23 2014 UTC (7 years, 7 months ago) by jfenwick
Modify unit tests to read their classes from esys.escriptcore.utestselect Change the line in that file to switch between unittest and unittest2
Revision 4934 - Directory Listing
Modified Tue May 13 00:28:11 2014 UTC (7 years, 7 months ago) by jfenwick
This commit is brought to you by the number 4934 and the tool "meld". Merge of partially complete split world code from branch.
Revision 4869 - Directory Listing
Modified Mon Apr 14 10:39:22 2014 UTC (7 years, 8 months ago) by caltinay
all of paso now lives in its own namespace.
Revision 4867 - Directory Listing
Modified Fri Apr 11 12:29:49 2014 UTC (7 years, 8 months ago) by caltinay
paso: starting to polish
Revision 4836 - Directory Listing
Modified Mon Apr 7 05:51:55 2014 UTC (7 years, 8 months ago) by caltinay
"Some" SystemMatrix clean up.....
Revision 4821 - Directory Listing
Modified Tue Apr 1 04:58:33 2014 UTC (7 years, 8 months ago) by sshaw
moved SolverOptions to c++, split into SolverOptions for the options and SolverBuddy as the state as a precursor to per-pde solving... does break some use cases (e.g. pde.getSolverOptions().DIRECT will now fail, new value access is with SolverOptions.DIRECT), examples and documentation updated to match
Revision 4819 - Directory Listing
Modified Tue Apr 1 03:50:23 2014 UTC (7 years, 8 months ago) by caltinay
Pattern shared ptrs
Revision 4818 - Directory Listing
Modified Mon Mar 31 00:16:20 2014 UTC (7 years, 8 months ago) by caltinay
SystemMatrixPattern shptr
Revision 4817 - Directory Listing
Modified Fri Mar 28 08:04:09 2014 UTC (7 years, 8 months ago) by caltinay
Coupler/Connector shared ptrs.
Revision 4816 - Directory Listing
Modified Fri Mar 28 06:16:02 2014 UTC (7 years, 8 months ago) by caltinay
paso::SharedComponents now header-only and shared ptr managed.
Revision 4814 - Directory Listing
Modified Fri Mar 28 04:31:02 2014 UTC (7 years, 8 months ago) by caltinay
paso::Distribution instances are now managed by a boost::shared_ptr, methods are all inline.
Revision 4809 - Directory Listing
Modified Thu Mar 27 05:52:41 2014 UTC (7 years, 8 months ago) by caltinay
Removed code duplication and moved IndexList to esysUtils header only. Renamed AML.cpp which is old,unused code.
Revision 4803 - Directory Listing
Modified Wed Mar 26 06:52:28 2014 UTC (7 years, 8 months ago) by caltinay
Removed obsolete wrappers for malloc and friends. Paso_Pattern -> paso::Pattern
Revision 4801 - Directory Listing
Modified Wed Mar 26 03:26:58 2014 UTC (7 years, 8 months ago) by caltinay
paso::Coupler and paso::Connector.
Revision 4800 - Directory Listing
Modified Wed Mar 26 01:50:04 2014 UTC (7 years, 8 months ago) by caltinay
paso::SystemMatrixPattern
Revision 4789 - Directory Listing
Modified Fri Mar 21 00:30:32 2014 UTC (7 years, 8 months ago) by sshaw
changing more awkward logic into more obvious (and correct, though i doubt a negative length ever happens) logic
Revision 4721 - Directory Listing
Modified Fri Feb 28 03:51:07 2014 UTC (7 years, 9 months ago) by jfenwick
Fixing strange casts. Removed old methods.
Revision 4707 - Directory Listing
Modified Fri Feb 21 03:07:09 2014 UTC (7 years, 9 months ago) by jduplessis
Modified domain in tests
Revision 4704 - Directory Listing
Modified Fri Feb 21 01:11:30 2014 UTC (7 years, 9 months ago) by jduplessis
added modification double *F_p=NULL; if(!p.F.isEmpty()) { p.F.requireWrite(); F_p=p.F.getSampleDataRW(0); } to all files such they will not operate on an empty F. Revision 4701 - Directory Listing
Modified Thu Feb 20 06:32:12 2014 UTC (7 years, 9 months ago) by jduplessis
Put in a check to make sure F is not used when empty. This prevents an exception.
Revision 4687 - Directory Listing
Modified Wed Feb 19 00:03:29 2014 UTC (7 years, 9 months ago) by jfenwick
Remove randomFill python method from ripley domains. All random data objects (for all domain types) should be generated using esys.escript.RandomData() The only filtered random we have is gaussian on ripley but it is triggered by passing the tuple as the last arg of RandomData(). While the interface is a bit more complicated (in that you always need to pass in shape and functionspace) it does mean we have a common interface for all domains. Removed randomFill from DataExpanded. The reasoning behind this is to force domains to call the util function themselves and enforce whatever consistancy requirements they have. Added version of blocktools to deal with 2D case in Ripley. Use blocktools for the 2D transfers [This was cleaner than modifying the previous implementation to deal with variable shaped points]. Note that under MPI, ripley can not generate random data (even unfiltered) if any of its per rank dimensions is <4 elements on any side. Unit tests for these calls are in but some extra checks still needed.
Revision 4684 - Directory Listing
Modified Tue Feb 18 01:17:02 2014 UTC (7 years, 9 months ago) by jduplessis
Removing Finley mesh import which was copied from run_linearPdeOnFinley... as it is not used.
Revision 4680 - Directory Listing
Modified Mon Feb 17 04:04:40 2014 UTC (7 years, 9 months ago) by jduplessis
changed name
Revision 4677 - Directory Listing
Modified Mon Feb 17 02:49:59 2014 UTC (7 years, 9 months ago) by jduplessis
adding nlpde tests
Revision 4676 - Directory Listing
Modified Mon Feb 17 02:41:15 2014 UTC (7 years, 9 months ago) by jduplessis
Unit test for nonlinear pde. test that it can generate a solution without error and that the appropriate coefficients are generated when setValue is called.
Revision 4672 - Directory Listing
Modified Thu Feb 13 01:10:29 2014 UTC (7 years, 10 months ago) by sshaw
compacted older style C comparison structure
Revision 4671 - Directory Listing
Modified Thu Feb 13 00:18:10 2014 UTC (7 years, 10 months ago) by jfenwick
Fixed another comparator which wasn't strict
Revision 4670 - Directory Listing
Modified Wed Feb 12 08:24:31 2014 UTC (7 years, 10 months ago) by jfenwick
Correcting comparator function so it acts as < rather than <=
Revision 4657 - Directory Listing
Modified Thu Feb 6 06:12:20 2014 UTC (7 years, 10 months ago) by jfenwick
I changed some files. Updated copyright notices, added GeoComp.
Revision 4644 - Directory Listing
Modified Mon Feb 3 00:03:52 2014 UTC (7 years, 10 months ago) by sshaw
fixed indent errors in coalgas, added future print import to seismic_wave, since it was using py3 style prints
Revision 4626 - Directory Listing
Modified Wed Jan 22 06:07:34 2014 UTC (7 years, 10 months ago) by caltinay
Eliminated all const_cast<Data*> hacks in ripley and finley now that Data.getSampleDataRO returns a const pointer.
Revision 4612 - Directory Listing
Modified Thu Jan 9 05:30:27 2014 UTC (7 years, 11 months ago) by gross
modifications to sonic seismic
Revision 4609 - Directory Listing
Modified Fri Dec 20 07:56:56 2013 UTC (7 years, 11 months ago) by gross
fix to deal with empty right hand side vector F.
Revision 4607 - Directory Listing
Modified Wed Dec 18 09:46:16 2013 UTC (7 years, 11 months ago) by jfenwick
include cmath in all cases rather than math.h - the mathinf for intel on windows is still there (in part because we have no way to test if it is still relevant)
Revision 4599 - Directory Listing
Modified Sun Dec 15 23:51:13 2013 UTC (8 years ago) by sshaw
merged 3.4.1 release changes into trunk
Revision 4576 - Directory Listing
Modified Mon Dec 9 23:35:30 2013 UTC (8 years ago) by sshaw
python3ified things, replaced mixed whitespace and xrange calls
Revision 4542 - Directory Listing
Modified Thu Nov 28 01:33:22 2013 UTC (8 years ago) by jfenwick
Moving to new icc and associated modules.
Revision 4530 - Directory Listing
Modified Wed Oct 30 04:34:21 2013 UTC (8 years, 1 month ago) by caltinay
Fix in finley loadMesh which needs to call updateTagList() for all ranks, even if a rank has no elements.
Revision 4524 - Directory Listing
Modified Tue Aug 27 01:32:10 2013 UTC (8 years, 3 months ago) by jfenwick
Steube!!!!!
Revision 4521 - Directory Listing
Modified Mon Aug 26 11:51:30 2013 UTC (8 years, 3 months ago) by jfenwick
Remove bool_t Part of random.
Revision 4512 - Directory Listing
Modified Mon Jul 29 05:27:16 2013 UTC (8 years, 4 months ago) by caltinay
With current Intel compiler (13.5.192) on savanna any build with OMP and without MPI will segfault in AbstractDomain->getPtr() for unknown reasons. Trying a workaround for finley which can be adapted to dudley and ripley if it works.
Revision 4509 - Directory Listing
Modified Wed Jul 24 08:37:29 2013 UTC (8 years, 4 months ago) by jfenwick
Fixed paths for utest.sh
Revision 4508 - Directory Listing
Modified Wed Jul 24 04:23:22 2013 UTC (8 years, 4 months ago) by jfenwick
Moving to escriptcore
Revision 4505 - Directory Listing
Modified Tue Jul 23 02:09:45 2013 UTC (8 years, 4 months ago) by jfenwick
Hopefully addresses mantis721
Revision 4501 - Directory Listing
Modified Wed Jul 17 00:02:26 2013 UTC (8 years, 5 months ago) by caltinay
This time I fixed the comment instead of the code for this special case.
Revision 4500 - Directory Listing
Modified Tue Jul 16 05:47:11 2013 UTC (8 years, 5 months ago) by caltinay
updated scons script
Revision 4499 - Directory Listing
Modified Tue Jul 16 05:42:19 2013 UTC (8 years, 5 months ago) by caltinay
finley: mainly const'ness fixes, some formatting.
Revision 4498 - Directory Listing
Modified Tue Jul 16 01:56:37 2013 UTC (8 years, 5 months ago) by caltinay
Another special case fix.
Revision 4497 - Directory Listing
Modified Mon Jul 15 23:32:28 2013 UTC (8 years, 5 months ago) by caltinay
Small fix for non-mpi build.
Revision 4496 - Directory Listing
Modified Mon Jul 15 06:53:44 2013 UTC (8 years, 5 months ago) by caltinay
finley (WIP): -moved all of finley into its namespace -introduced some shared pointers -Mesh is now a class -other bits and pieces...
Revision 4493 - Directory Listing
Modified Wed Jul 3 06:32:11 2013 UTC (8 years, 5 months ago) by caltinay
Fixed omp typo - gcc didn't pick it up...
Revision 4492 - Directory Listing
Modified Tue Jul 2 01:44:11 2013 UTC (8 years, 5 months ago) by caltinay
Finley changes that were held back while in release mode - moved more stuff into finley namespace.
Revision 4480 - Directory Listing
Modified Mon Jun 24 05:09:52 2013 UTC (8 years, 5 months ago) by caltinay
More valgrind suppressions and memory leak fixes identified in various places.
Revision 4478 - Directory Listing
Modified Thu Jun 20 06:34:02 2013 UTC (8 years, 5 months ago) by caltinay
Moved appendRankToFilename to header within namespace to remove code duplication and fixed memory leaks this way.
Revision 4474 - Directory Listing
Modified Wed Jun 19 06:44:47 2013 UTC (8 years, 5 months ago) by caltinay
Brought over leak fix, gcc 4.8 fix and mismatched new[]/delete fix from release branch.
Revision 4444 - Directory Listing
Modified Mon Jun 10 07:55:05 2013 UTC (8 years, 6 months ago) by caltinay
Converted IndexList to a std::list.
Revision 4442 - Directory Listing
Modified Fri Jun 7 07:04:44 2013 UTC (8 years, 6 months ago) by caltinay
cosmetic changes.
Revision 4441 - Directory Listing
Modified Fri Jun 7 02:23:49 2013 UTC (8 years, 6 months ago) by caltinay
finley now uses Data objects directly instead of going through the C wrapper.
Revision 4437 - Directory Listing
Modified Tue Jun 4 05:37:18 2013 UTC (8 years, 6 months ago) by caltinay
finley: -Removed obsolete reference files (OpenDX) -Converted tag map to a std::map -loosened tests to ignore tag order in file -added some decorators for test skips
Revision 4432 - Directory Listing
Modified Fri May 31 07:13:38 2013 UTC (8 years, 6 months ago) by caltinay
updated sconscript file
Revision 4431 - Directory Listing
Modified Fri May 31 07:09:03 2013 UTC (8 years, 6 months ago) by caltinay
finley ElementFile is now a class...
Revision 4430 - Directory Listing
Modified Fri May 31 00:38:42 2013 UTC (8 years, 6 months ago) by caltinay
Don't panic - just forgot some brackets... D'oh!
Revision 4429 - Directory Listing
Modified Thu May 30 13:52:01 2013 UTC (8 years, 6 months ago) by caltinay
Okay I now know that std::vector<bool> is evil, but WTF happens in this context??? It only crashes with more than one thread and more than one MPI process.
Revision 4428 - Directory Listing
Modified Thu May 30 06:39:10 2013 UTC (8 years, 6 months ago) by caltinay
finley's NodeFile is now a class. Associated changes: - use of some C++ constructs/functions/types (1st pass) - removal of obsolete pointer check - merging of some duplicated code - ...
Revision 4425 - Directory Listing
Modified Mon May 27 05:44:28 2013 UTC (8 years, 6 months ago) by caltinay
svn server test and finley stuff.
Revision 4424 - Directory Listing
Modified Mon May 27 04:48:31 2013 UTC (8 years, 6 months ago) by caltinay
SVN server test.
Revision 4423 - Directory Listing
Modified Mon May 27 04:38:59 2013 UTC (8 years, 6 months ago) by caltinay
finley bits.
Revision 4422 - Directory Listing
Modified Fri May 24 04:42:29 2013 UTC (8 years, 6 months ago) by caltinay
s/jacobeans/jacobians and other bits and pieces.
Revision 4421 - Directory Listing
Modified Tue May 21 05:16:39 2013 UTC (8 years, 6 months ago) by caltinay
Finley... there were actually some long-standing errors in the checks.
Revision 4415 - Directory Listing
Modified Fri May 17 00:33:02 2013 UTC (8 years, 7 months ago) by caltinay
Commented unused var to make compiler happy.
Revision 4414 - Directory Listing
Modified Thu May 16 05:37:32 2013 UTC (8 years, 7 months ago) by caltinay
Few more bits and pieces in finley.
Revision 4410 - Directory Listing
Modified Tue May 14 11:29:23 2013 UTC (8 years, 7 months ago) by caltinay
Oops, I saw this coming.
Revision 4408 - Directory Listing
Modified Tue May 14 06:58:43 2013 UTC (8 years, 7 months ago) by caltinay
Mostly no-op - trying to get some consistency in style while going through a few files. Also some minor changes related to C->C++ (e.g. no need to copy vector to pass to functions etc.)
Revision 4406 - Directory Listing
Modified Tue May 14 02:54:09 2013 UTC (8 years, 7 months ago) by caltinay
Removed references to pyvisi which disappeared a few releases ago...
Revision 4398 - Directory Listing
Modified Thu May 9 08:42:44 2013 UTC (8 years, 7 months ago) by jfenwick
support for supressing doco subpackages. fiddling with one of the imports to try to reduce the number of places where Data appears. Seriously it looks like we have 8 different Data classes
Revision 4360 - Directory Listing
Modified Mon Apr 15 02:41:42 2013 UTC (8 years, 8 months ago) by jfenwick
some mismatched memory ops
Revision 4348 - Directory Listing
Modified Tue Apr 2 07:15:43 2013 UTC (8 years, 8 months ago) by caltinay
Reapply some of the spelling fixes that got lost....
Revision 4347 - Directory Listing
Modified Tue Apr 2 04:58:44 2013 UTC (8 years, 8 months ago) by jfenwick
Fixed some const char* conversions
Revision 4346 - Directory Listing
Modified Tue Apr 2 04:46:45 2013 UTC (8 years, 8 months ago) by jfenwick
Bringing the changes from doubleplusgood branch. Can't merge directly because svn doesn't transfer changes to renamed files (mutter grumble).
Revision 4286 - Directory Listing
Modified Thu Mar 7 04:28:11 2013 UTC (8 years, 9 months ago) by caltinay
Assorted spelling fixes.
Revision 4255 - Directory Listing
Modified Wed Feb 27 03:06:21 2013 UTC (8 years, 9 months ago) by jfenwick
Hopefully, this will address the interpolation problems. New canInterpolate() function exposed to python which calls probeInterpolation AbstractDomain now has an additional virtual. preferredIntrpolationOnDomain() This will return 0 if interpolation is impossible, 1 if possible and preferred. It will return -1 if interpolation is possible and preferred in the oposite direction. A value of -1 does not say that the proposed interpolation is possible or not. Rather it indicates "please use the other way". If you really _need_ to test it that way, use probeInterpolationOnDomain
Revision 4192 - Directory Listing
Modified Tue Feb 12 00:28:47 2013 UTC (8 years, 10 months ago) by gross
problem with nc reader for dudley and finley fixed: the reader builds now the taginuse lists.
Revision 4185 - Directory Listing
Modified Fri Feb 8 09:06:21 2013 UTC (8 years, 10 months ago) by gross
modifications to cookbook
Revision 4154 - Directory Listing
Modified Tue Jan 22 09:30:23 2013 UTC (8 years, 10 months ago) by jfenwick
Round 1 of copyright fixes
Revision 4114 - Directory Listing
Modified Fri Dec 14 04:24:46 2012 UTC (9 years ago) by caltinay
Time to remove deprecated saveVTK/DX methods from Data and Domain.
Revision 4085 - Directory Listing
Modified Tue Nov 20 07:04:11 2012 UTC (9 years ago) by jfenwick
nonuniformInterolate and Slope added. Doco later
Revision 4078 - Directory Listing
Modified Fri Nov 16 07:50:49 2012 UTC (9 years ago) by jfenwick
Unit tests for binary install with no scons and no source tree. Script for installing and testing a .deb within a chroot.
Revision 4072 - Directory Listing
Modified Thu Nov 15 01:58:35 2012 UTC (9 years, 1 month ago) by jfenwick
Fix to prevent escript from segfaulting on quantal
Revision 4040 - Directory Listing
Modified Sun Oct 28 22:37:45 2012 UTC (9 years, 1 month ago) by jfenwick
Some py3 changes that didn't get committed for some reason
Revision 4037 - Directory Listing
Modified Fri Oct 26 03:04:30 2012 UTC (9 years, 1 month ago) by gross
some modifictaions to make implementation for magnetic inversion easier
Revision 4035 - Directory Listing
Modified Thu Oct 25 03:10:14 2012 UTC (9 years, 1 month ago) by caltinay
Tweaked scons files so tests work even when specifying non-absolute build_dir.
Revision 4024 - Directory Listing
Modified Mon Oct 22 06:11:29 2012 UTC (9 years, 1 month ago) by gross
tag testing for finley and dudley files added.
Revision 4019 - Directory Listing
Modified Thu Oct 11 08:12:55 2012 UTC (9 years, 2 months ago) by jfenwick
More tabbing errors, range/xrange ...
Revision 4018 - Directory Listing
Modified Thu Oct 11 04:43:39 2012 UTC (9 years, 2 months ago) by jfenwick
Used "new" raise syntax in a few places Fixed some tabbing Fixed some funnies involving changes to xrange/range added a quick and nasty __hash__ function to Symbol def __hash__(self): return id(self) This does mean that __hash__ and == do not match exactly. Not sure if that matters for our purposes
Revision 4003 - Directory Listing
Modified Fri Sep 28 00:20:01 2012 UTC (9 years, 2 months ago) by jfenwick
Load balancing on unit tests
Revision 3999 - Directory Listing
Modified Thu Sep 27 01:31:07 2012 UTC (9 years, 2 months ago) by jfenwick
Splitting tests
Revision 3998 - Directory Listing
Modified Thu Sep 27 01:17:28 2012 UTC (9 years, 2 months ago) by caltinay
Finley now throws in ownSample() for reduced function with mpisize>1.
Revision 3996 - Directory Listing
Modified Thu Sep 27 00:54:10 2012 UTC (9 years, 2 months ago) by caltinay
Don't test saveCSV for cases it does not work with.
Revision 3994 - Directory Listing
Modified Wed Sep 26 07:38:38 2012 UTC (9 years, 2 months ago) by jfenwick
Install doco still needs work. Removing some of the weird: esys.finley.finley type modules
Revision 3993 - Directory Listing
Modified Wed Sep 26 07:00:55 2012 UTC (9 years, 2 months ago) by caltinay
Addressing mantis 651. Test for finley will fail under MPI since there is sth wrong with the way ReducedContinuousFunction samples are interrogated.
Revision 3992 - Directory Listing
Modified Wed Sep 26 02:50:48 2012 UTC (9 years, 2 months ago) by caltinay
Data.cpp: Removed some namespace ambiguities which fixes doxygen warnings, some cleanup and reindent. *: doxygen fixes.
Revision 3991 - Directory Listing
Modified Tue Sep 25 23:52:22 2012 UTC (9 years, 2 months ago) by caltinay
Updated doxygen cfg file and made a few first changes to doco.
Revision 3982 - Directory Listing
Modified Fri Sep 21 03:23:22 2012 UTC (9 years, 2 months ago) by jfenwick
More edits + removing pyvisi from trunk
Revision 3981 - Directory Listing
Modified Fri Sep 21 02:47:54 2012 UTC (9 years, 2 months ago) by jfenwick
First pass of updating copyright notices
Revision 3978 - Directory Listing
Modified Thu Sep 20 04:36:17 2012 UTC (9 years, 2 months ago) by caltinay
Make sympy optional as it was intended initially. Trying to instantiate anything from symbolic will raise an exception if sympy is not available.
Revision 3975 - Directory Listing
Modified Thu Sep 20 01:54:06 2012 UTC (9 years, 2 months ago) by caltinay
Merged symbolic branch into trunk. Curious what daniel and spartacus have to say...
Revision 3941 - Directory Listing
Modified Fri Jul 27 00:38:10 2012 UTC (9 years, 4 months ago) by jfenwick
Some more test disabling
Revision 3934 - Directory Listing
Modified Fri Jul 13 09:01:16 2012 UTC (9 years, 5 months ago) by jfenwick
Added unit test for tagreader
Revision 3914 - Directory Listing
Modified Wed Jun 20 04:51:47 2012 UTC (9 years, 5 months ago) by jfenwick
Only allow setX from ContinuousFunctions. This addresses mantis 644.
Revision 3912 - Directory Listing
Modified Fri Jun 15 05:02:42 2012 UTC (9 years, 6 months ago) by jfenwick
GetMeshFromFile wrapper to load .fly or .msh depending on the extension. Note that this only works on one of the two formats named .msh Addresses mantis issue 641.
Revision 3911 - Directory Listing
Modified Thu Jun 14 01:01:03 2012 UTC (9 years, 6 months ago) by jfenwick
Copyright changes
Revision 3909 - Directory Listing
Modified Wed Jun 13 07:03:06 2012 UTC (9 years, 6 months ago) by gross
darcy solver removes hydrostatic pressure from problem now
Revision 3907 - Directory Listing
Modified Fri Jun 8 01:20:09 2012 UTC (9 years, 6 months ago) by jfenwick
Only switch on useElementsOnFace by default where we actually support it
Revision 3906 - Directory Listing
Modified Thu Jun 7 11:00:50 2012 UTC (9 years, 6 months ago) by jfenwick
Disable AMG on MPI builds
Revision 3901 - Directory Listing
Modified Wed May 23 08:09:45 2012 UTC (9 years, 6 months ago) by jfenwick
Rectangle and Brick use rich face element by default. This is to address issue #653 Updated unit tests to explicitly not use them where they didn't specify previoulsy
Revision 3895 - Directory Listing
Modified Mon Apr 16 00:09:42 2012 UTC (9 years, 8 months ago) by jfenwick
Adding some files which went missing in the merge
Revision 3892 - Directory Listing
Modified Tue Apr 10 08:57:23 2012 UTC (9 years, 8 months ago) by jfenwick
Merged changes across from the attempt2 branch. This version builds and passes python2 tests. It also passes most python3 tests.
Revision 3825 - Directory Listing
Modified Tue Feb 14 06:11:58 2012 UTC (9 years, 10 months ago) by gross
don't call MPI withing parallel regions
Revision 3822 - Directory Listing
Modified Mon Feb 13 06:22:06 2012 UTC (9 years, 10 months ago) by gross
Transport solver supports now constraints (except the linear CN)
Revision 3808 - Directory Listing
Modified Mon Feb 6 06:17:47 2012 UTC (9 years, 10 months ago) by gross
some modifications to the test examples
Revision 3805 - Directory Listing
Modified Mon Feb 6 01:42:20 2012 UTC (9 years, 10 months ago) by gross
return circumcircle now.
Revision 3797 - Directory Listing
Modified Thu Feb 2 09:28:59 2012 UTC (9 years, 10 months ago) by gross
test for integration of constant data added.
Revision 3793 - Directory Listing
Modified Wed Feb 1 07:39:43 2012 UTC (9 years, 10 months ago) by gross
new implementation of FCT solver with some modifications to the python interface
Revision 3792 - Directory Listing
Modified Wed Feb 1 06:16:25 2012 UTC (9 years, 10 months ago) by caltinay
Merged ripley rectangular domain into trunk.
Revision 3772 - Directory Listing
Modified Wed Jan 18 04:19:33 2012 UTC (9 years, 10 months ago) by jfenwick
Converting finley directories
Revision 3739 - Directory Listing
Modified Tue Dec 13 00:48:26 2011 UTC (10 years ago) by caltinay
Ok, the python wrappers do use esysUtils for the exception translator. Anything else?
Revision 3737 - Directory Listing
Modified Tue Dec 13 00:04:39 2011 UTC (10 years ago) by caltinay
Reordered and removed superfluous libraries from link lines. Hope W32 likes that.
Revision 3736 - Directory Listing
Modified Mon Dec 12 01:26:51 2011 UTC (10 years ago) by jfenwick
Fixed apparent multiple instances of Esys
Revision 3729 - Directory Listing
Modified Thu Dec 8 06:46:49 2011 UTC (10 years ago) by jfenwick
Fixed mistake in Finley_Assemble_PDE and the dudley equivalent. Cihan - you might want to look to see if Ripley is affected
Revision 3681 - Directory Listing
Modified Fri Nov 18 04:54:15 2011 UTC (10 years ago) by caltinay
Moved implementation of getTransportTypeId() and getSystemMatrixTypeId() into pasowrap.
Revision 3678 - Directory Listing
Modified Thu Nov 17 06:32:05 2011 UTC (10 years ago) by jfenwick
Reversing other changes which made it in somehow
Revision 3675 - Directory Listing
Modified Thu Nov 17 00:53:38 2011 UTC (10 years, 1 month ago) by jfenwick
pasowrap joins the trunk.
Revision 3649 - Directory Listing
Modified Fri Nov 4 04:35:15 2011 UTC (10 years, 1 month ago) by gross
gmsh reader understand name tags now.
Revision 3639 - Directory Listing
Modified Tue Oct 25 02:13:26 2011 UTC (10 years, 1 month ago) by caltinay
Assorted spelling fixes in finley C.
Revision 3637 - Directory Listing
Modified Fri Oct 21 04:29:33 2011 UTC (10 years, 1 month ago) by caltinay
Fixed memory leaks in loadMesh() for dudley and finley.
Revision 3635 - Directory Listing
Modified Fri Oct 21 00:26:01 2011 UTC (10 years, 1 month ago) by caltinay
Fixed minor issues.
Revision 3628 - Directory Listing
Modified Wed Oct 19 02:09:36 2011 UTC (10 years, 1 month ago) by caltinay
Prepend our libraries instead of appending. This should fix HYPRE link issue on epic.
Revision 3603 - Directory Listing
Modified Mon Sep 19 03:42:53 2011 UTC (10 years, 2 months ago) by caltinay
Fixed some unused var errors in non-mpi build.
Revision 3597 - Directory Listing
Modified Thu Sep 15 06:03:17 2011 UTC (10 years, 3 months ago) by caltinay
Switching to external cppunit: -removed tools/CppUnitTest -updated scons script and files -updated tests to changed API -updated readme Bumped scons options file version to 201. Additions: -cppunit* -boomeramg* -vsl_random
Revision 3578 - Directory Listing
Modified Mon Sep 5 23:18:45 2011 UTC (10 years, 3 months ago) by gross
Missing dependence added (?) and typo in test files fixed.
Revision 3576 - Directory Listing
Modified Mon Sep 5 06:33:20 2011 UTC (10 years, 3 months ago) by caltinay
Fixed two more instances of macro-dependent unused vars.
Revision 3572 - Directory Listing
Modified Thu Sep 1 07:54:42 2011 UTC (10 years, 3 months ago) by jfenwick
Comment out a non-existant function from the Finley interface and (hopefully) fix mantis bug #623
Revision 3569 - Directory Listing
Modified Thu Sep 1 02:42:36 2011 UTC (10 years, 3 months ago) by gross
Darcy flow solver and docu reviewed. Coupled solvers have been removed.
Revision 3563 - Directory Listing
Modified Mon Aug 29 04:26:46 2011 UTC (10 years, 3 months ago) by jfenwick
Another try to fix the windows issue
Revision 3562 - Directory Listing
Modified Mon Aug 29 03:31:13 2011 UTC (10 years, 3 months ago) by jfenwick
Removed DLL export from non-exported methods
Revision 3561 - Directory Listing
Modified Mon Aug 29 02:51:05 2011 UTC (10 years, 3 months ago) by jfenwick
Attempt to fix windows problem
Revision 3558 - Directory Listing
Modified Fri Aug 26 06:09:02 2011 UTC (10 years, 3 months ago) by jfenwick
Merged changes from dirac. Now the only way to add diracPoints is to use the constructor
Revision 3551 - Directory Listing
Modified Fri Aug 19 03:53:41 2011 UTC (10 years, 3 months ago) by jfenwick
Changing unit test calls to use non deprecated forms (python2.7) fixes bug #568
Revision 3546 - Directory Listing
Modified Thu Jul 28 01:32:20 2011 UTC (10 years, 4 months ago) by jfenwick
Replaced 'and' with && since windows doesn't seem to understand it
Revision 3528 - Directory Listing
Modified Tue May 24 07:02:08 2011 UTC (10 years, 6 months ago) by gross
Revision 3527 - Directory Listing
Modified Tue May 24 06:59:20 2011 UTC (10 years, 6 months ago) by gross
modifications to the coal seam gas
Revision 3526 - Directory Listing
Modified Tue May 24 05:01:46 2011 UTC (10 years, 6 months ago) by gross
coal code uses nodal wells now
Revision 3525 - Directory Listing
Modified Tue May 24 04:04:58 2011 UTC (10 years, 6 months ago) by gross
and more typos fixed.
Revision 3524 - Directory Listing
Modified Tue May 24 02:23:00 2011 UTC (10 years, 6 months ago) by gross
typo fixed.
Revision 3523 - Directory Listing
Modified Tue May 24 02:03:37 2011 UTC (10 years, 6 months ago) by caltinay
Fixed declaration order (register const) for gcc-4.6
Revision 3522 - Directory Listing
Modified Tue May 24 00:57:58 2011 UTC (10 years, 6 months ago) by gross
(almost) full support for Point elements
Revision 3520 - Directory Listing
Modified Mon May 23 06:24:30 2011 UTC (10 years, 6 months ago) by gross
some fixes for to point interpolation
Revision 3519 - Directory Listing
Modified Mon May 23 05:55:47 2011 UTC (10 years, 6 months ago) by gross
compiler fixes
Revision 3516 - Directory Listing
Modified Fri May 20 00:57:41 2011 UTC (10 years, 6 months ago) by gross
missing file
Revision 3515 - Directory Listing
Modified Thu May 19 08:20:57 2011 UTC (10 years, 6 months ago) by gross
some first work for DiracFunctions
Revision 3510 - Directory Listing
Modified Fri May 13 06:09:49 2011 UTC (10 years, 7 months ago) by gross
some fixes for the compilation without BOOMERAMG
Revision 3508 - Directory Listing
Modified Fri May 13 04:15:29 2011 UTC (10 years, 7 months ago) by lgao
Add Boomer AMG as a new preconditioner Can be used by .setPreconditioner(SolverOptions.BOOMERAMG) and the following parallel coarsening method can be used together with Boomer AMG preconditioner: .setCoarsening(SolverOptions.CIJP_FIXED_RANDOM_COARSENING) .setCoarsening(SolverOptions.CIJP_COARSENING) .setCoarsening(SolverOptions.FALGOUT_COARSENING) .setCoarsening(SolverOptions.PMIS_COARSENING) .setCoarsening(SolverOptions.HMIS_COARSENING) Note that Boomer AMG is only available when MPI is enabled.
Revision 3503 - Directory Listing
Modified Thu Apr 28 06:55:30 2011 UTC (10 years, 7 months ago) by gross
missing file
Revision 3502 - Directory Listing
Modified Thu Apr 28 05:06:24 2011 UTC (10 years, 7 months ago) by gross
Darcy flow solver is now supporting 4 solvers
Revision 3501 - Directory Listing
Modified Wed Apr 13 04:07:53 2011 UTC (10 years, 8 months ago) by gross
Revision 3494 - Directory Listing
Modified Tue Apr 5 04:12:08 2011 UTC (10 years, 8 months ago) by gross
more coal seam gas
Revision 3490 - Directory Listing
Modified Wed Mar 30 02:24:33 2011 UTC (10 years, 8 months ago) by caltinay
More gcc-4.6 fixes (mostly initialized-but-unused-var warnings)
Revision 3487 - Directory Listing
Modified Mon Mar 28 03:44:22 2011 UTC (10 years, 8 months ago) by gross
some compile fixes
Revision 3486 - Directory Listing
Modified Sun Mar 27 22:27:45 2011 UTC (10 years, 8 months ago) by gross
bug in eigenvector calculation fixed (see mantis=594)
Revision 3485 - Directory Listing
Modified Thu Mar 24 22:44:40 2011 UTC (10 years, 8 months ago) by gross
some compile fixes
Revision 3484 - Directory Listing
Modified Thu Mar 24 05:42:07 2011 UTC (10 years, 8 months ago) by gross
some work on coal gas
Revision 3478 - Directory Listing
Modified Wed Mar 23 04:02:39 2011 UTC (10 years, 8 months ago) by gross
coal gas stuff
Revision 3458 - Directory Listing
Modified Mon Jan 31 07:06:42 2011 UTC (10 years, 10 months ago) by gross
more on AMG under MPI
Revision 3454 - Directory Listing
Modified Tue Jan 25 04:00:29 2011 UTC (10 years, 10 months ago) by caltinay
Fixed some minor doxygen issues.
Revision 3449 - Directory Listing
Modified Fri Jan 21 05:48:15 2011 UTC (10 years, 10 months ago) by gross
compile problem in AMG fixed.
Revision 3443 - Directory Listing
Modified Tue Jan 18 05:38:48 2011 UTC (10 years, 10 months ago) by gross
test for AMG fixed. New test set guarantees SPD stiffness matrix. Previously this was not guaranteed and could lead to singular coarse level matrices (which cause MKL based runs to fail)
Revision 3442 - Directory Listing
Modified Tue Jan 18 01:47:36 2011 UTC (10 years, 10 months ago) by gross
emeregncy
Revision 3440 - Directory Listing
Modified Fri Jan 14 00:04:53 2011 UTC (10 years, 11 months ago) by gross
a second AMG interpolation implemented
Revision 3436 - Directory Listing
Modified Mon Jan 10 02:06:07 2011 UTC (10 years, 11 months ago) by plaub
Added/modified AMG tests: - "self.failUnless(...)" became "self.assertTrue(...)" because fail* is soon to be deprecated, - fixed logical error in self.assertTrue argument, - added another test, 'testSquare'. Added some print statements to AMG.c in verbose mode to identify which of the stopping conditions were fulfilled. Changed default AMG parameters for 'setNumPreSweeps' and 'setNumPostSweeps' to 1 (huge speed improvment). P.S Beware of bugs in the above code; I have only proved it correct, not tried it... Jokes!
Revision 3432 - Directory Listing
Modified Fri Jan 7 01:32:07 2011 UTC (10 years, 11 months ago) by jfenwick
Made import statements a bit more specific to clean up the epydoc
Revision 3411 - Directory Listing
Modified Thu Dec 9 22:42:02 2010 UTC (11 years ago) by gross
some cleaning
Revision 3404 - Directory Listing
Modified Tue Dec 7 10:24:32 2010 UTC (11 years ago) by gross
missing file
Revision 3403 - Directory Listing
Modified Tue Dec 7 08:13:51 2010 UTC (11 years ago) by gross
some small fixes
Revision 3402 - Directory Listing
Modified Tue Dec 7 07:36:12 2010 UTC (11 years ago) by gross
AMG support now block size > 3 (requires clapack or MKL). additional diagnostics for AMG
Revision 3400 - Directory Listing
Modified Mon Dec 6 02:23:07 2010 UTC (11 years ago) by caltinay
Moved vtkCellType.h to weipa where it belongs now.
Revision 3379 - Directory Listing
Modified Wed Nov 24 04:48:49 2010 UTC (11 years ago) by gross
some clarification on lumping
Revision 3368 - Directory Listing
Modified Fri Nov 19 05:59:46 2010 UTC (11 years ago) by jfenwick
3d interpolateTable support. New more generic interface for table interpolation. tests and doco updated
Revision 3355 - Directory Listing
Modified Tue Nov 16 06:35:06 2010 UTC (11 years, 1 month ago) by caltinay
Fixed building with boost < 1.40 by - removing the saveVTK method from dudley's MeshAdapter completely (no point introducing it now when we are trying to get rid of it soon) - adding a helper function to weipa's python layer which can be called from C++ with older boost versions.
Revision 3352 - Directory Listing
Modified Tue Nov 16 03:58:09 2010 UTC (11 years, 1 month ago) by gross
exposure of AMG options
Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (11 years, 1 month ago) by caltinay
escript now supports out-of-tree builds. All build and test files are now created under a user-definable build_dir directory. This also fixes issue 291. Removed most svn:ignore props since they are no longer required.
Revision 3346 - Directory Listing
Modified Fri Nov 12 01:19:02 2010 UTC (11 years, 1 month ago) by caltinay
Replaced usage of esys.escript.util.saveVTK by weipa.saveVTK in all python scripts.
Revision 3344 - Directory Listing
Modified Thu Nov 11 23:26:52 2010 UTC (11 years, 1 month ago) by caltinay
Phew! -escript, finley, and dudley now uses weipa's saveVTK implementation -moved tests from finley to weipa accordingly; dudley still to do -rebaselined all test files -fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema -added a deprecation warning to esys.escript.util.saveVTK -todo: change doco, tests and other places to use weipa.saveVTK
Revision 3335 - Directory Listing
Modified Wed Nov 3 05:02:57 2010 UTC (11 years, 1 month ago) by jfenwick
Fix the launcher so that it can give an environment even if buildvars is not present. Environment now includes scons for standalone builds. Fixes and cleanup for the install documentation. scons TEMPLATES updated to define the optionfile version by default. ...mumble finley no longer imports escript into the default namespace ...
Revision 3317 - Directory Listing
Modified Thu Oct 28 00:50:41 2010 UTC (11 years, 1 month ago) by caltinay
Removed bogus mpi.h includes, replaced others by our esysUtils wrapper and rearranged so that the wrapper always comes before netcdf which fixes linking problems when disabling mpi on systems with netCDF 4.x.
Revision 3312 - Directory Listing
Modified Tue Oct 26 07:54:58 2010 UTC (11 years, 1 month ago) by gross
last step for a clean up version of the AMG
Revision 3303 - Directory Listing
Modified Mon Oct 25 04:33:31 2010 UTC (11 years, 1 month ago) by gross
more clean up work on the AMG
Revision 3290 - Directory Listing
Modified Wed Oct 20 08:31:56 2010 UTC (11 years, 1 month ago) by gross
small fixes
Revision 3289 - Directory Listing
Modified Wed Oct 20 07:07:11 2010 UTC (11 years, 1 month ago) by gross
missing factor fixed.
Revision 3286 - Directory Listing
Modified Tue Oct 19 00:36:27 2010 UTC (11 years, 1 month ago) by gross
small memory leak fixed.
Revision 3283 - Directory Listing
Modified Mon Oct 18 22:39:28 2010 UTC (11 years, 1 month ago) by gross
AMG reengineered, BUG is Smoother fixed.
Revision 3276 - Directory Listing
Modified Thu Oct 14 21:38:05 2010 UTC (11 years, 2 months ago) by gross
new damage solver
Revision 3275 - Directory Listing
Modified Thu Oct 14 06:15:27 2010 UTC (11 years, 2 months ago) by gross
As it turns out the tangential operator implementation is not a good idea. This a check in to save the last version of this approach before starting using a different method.
Revision 3269 - Directory Listing
Modified Wed Oct 13 03:21:50 2010 UTC (11 years, 2 months ago) by jfenwick
Fixed some intel compiler warnings. Put linearPDEs back the way it was and present a common interface for dudley and finley (as per Lutz)
Revision 3263 - Directory Listing
Modified Tue Oct 12 01:16:21 2010 UTC (11 years, 2 months ago) by caltinay
Updated convection script to use escript DataManager.
Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (11 years, 2 months ago) by jfenwick
Merging dudley and scons updates from branches
Revision 3200 - Directory Listing
Modified Thu Sep 23 06:53:36 2010 UTC (11 years, 2 months ago) by gross
more damage
Revision 3193 - Directory Listing
Modified Tue Sep 21 06:56:44 2010 UTC (11 years, 2 months ago) by gross
more clean up in AMG
Revision 3181 - Directory Listing
Modified Tue Sep 14 05:01:00 2010 UTC (11 years, 3 months ago) by jfenwick
Fix to buggy recovery of colouring information. Unfortunately unable to fix buggy spelling of colour.
Revision 3177 - Directory Listing
Modified Mon Sep 13 10:30:24 2010 UTC (11 years, 3 months ago) by gross
running vresion
Revision 3175 - Directory Listing
Modified Fri Sep 10 09:03:38 2010 UTC (11 years, 3 months ago) by gross
intial checkin
Revision 3111 - Directory Listing
Modified Thu Aug 26 06:49:42 2010 UTC (11 years, 3 months ago) by gross
some diagnostics for time step backtracing added
Revision 3097 - Directory Listing
Modified Fri Aug 20 04:59:12 2010 UTC (11 years, 3 months ago) by gross
some modifications to the GaussSeidel
Revision 3094 - Directory Listing
Modified Fri Aug 13 08:38:06 2010 UTC (11 years, 4 months ago) by gross
The MPI and sequational GAUSS_SEIDEL have been merged. The couring and main diagonal pointer is now manged by the patternm which means that they are calculated once only even if the preconditioner is deleted.
Revision 3083 - Directory Listing
Modified Tue Aug 3 06:34:35 2010 UTC (11 years, 4 months ago) by caltinay
Updated some svn:ignore props.
Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (11 years, 4 months ago) by jfenwick
Switched the build_dir keyword param to variant_dir. Should fix issue 525.
Revision 3071 - Directory Listing
Modified Wed Jul 21 05:37:30 2010 UTC (11 years, 4 months ago) by gross
new darcy flux
Revision 3051 - Directory Listing
Modified Tue Jun 29 00:45:49 2010 UTC (11 years, 5 months ago) by lgao
Hybrid MPI/OpenMP versioned Gauss_Seidel preconditioner is added. To use it, use "SolverOptions.GAUSS_SEIDEL_MPI" in python script.
Revision 3046 - Directory Listing
Modified Tue Jun 22 08:01:55 2010 UTC (11 years, 5 months ago) by gross
some examples for a simple subduction model
Revision 3044 - Directory Listing
Modified Fri Jun 18 04:48:47 2010 UTC (11 years, 5 months ago) by artak
Put back
Revision 3043 - Directory Listing
Modified Fri Jun 18 04:45:14 2010 UTC (11 years, 5 months ago) by artak
Problem with latest MKL should be fixed now. The problem was solving unrolled block matrix with MKL.
Revision 3033 - Directory Listing
Modified Wed Jun 2 10:17:00 2010 UTC (11 years, 6 months ago) by gross
fix for overflow
Revision 3028 - Directory Listing
Modified Thu May 13 03:41:27 2010 UTC (11 years, 7 months ago) by gross
a new test problem (doesn't use unit testing)
Revision 3027 - Directory Listing
Modified Wed May 12 05:26:09 2010 UTC (11 years, 7 months ago) by gross
some little fixes in an old script
Revision 2999 - Directory Listing
Modified Fri Mar 26 00:00:39 2010 UTC (11 years, 8 months ago) by artak
NE set to 10 elemennt, because 6 is too small for mpi=8 job.
Revision 2991 - Directory Listing
Modified Mon Mar 22 05:42:48 2010 UTC (11 years, 8 months ago) by gross
isub as private added
Revision 2990 - Directory Listing
Modified Fri Mar 19 05:57:22 2010 UTC (11 years, 8 months ago) by gross
some prints removed.
Revision 2989 - Directory Listing
Modified Thu Mar 18 01:45:55 2010 UTC (11 years, 9 months ago) by gross
- bug in error handling in the case of lumped mass matrix fixed. - switched back to rowsum lumping as there are problems with HRZ lumping for order 2
Revision 2988 - Directory Listing
Modified Tue Mar 16 06:14:30 2010 UTC (11 years, 9 months ago) by gross
C-level lumping switched on
Revision 2987 - Directory Listing
Modified Tue Mar 16 01:32:43 2010 UTC (11 years, 9 months ago) by gross
FCT solver rewritten
Revision 2960 - Directory Listing
Modified Tue Mar 2 07:54:11 2010 UTC (11 years, 9 months ago) by gross
new DarcyFlux solver
Revision 2940 - Directory Listing
Modified Fri Feb 19 00:38:45 2010 UTC (11 years, 9 months ago) by caltinay
Minor potential optimization: prefer empty() over size()==0.
Revision 2934 - Directory Listing
Modified Fri Feb 12 05:09:06 2010 UTC (11 years, 10 months ago) by gross
gmsh reader supports second order recs and hex now
Revision 2898 - Directory Listing
Modified Mon Feb 1 01:23:46 2010 UTC (11 years, 10 months ago) by caltinay
Reverted the move of system_dep.h since it didn't solve the problem nicely. Created a wrapper class for the needed functionality instead.
Revision 2897 - Directory Listing
Modified Mon Feb 1 01:22:50 2010 UTC (11 years, 10 months ago) by lgao
Fix the Parmetis problem related with Mantis issue 0000480. In case there is any node with no vertex, Parmetis will not be used and a message will be printed.
Revision 2895 - Directory Listing
Modified Fri Jan 29 04:58:16 2010 UTC (11 years, 10 months ago) by caltinay
Moved finley's system_dep.h file up to the C level to be able to export two functions that are used by the dataexporter. Changed include paths and C++ style comments accordingly.
Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (11 years, 10 months ago) by jfenwick
Don't panic. Updating copyright stamps
Revision 2867 - Directory Listing
Modified Fri Jan 22 06:28:02 2010 UTC (11 years, 10 months ago) by gross
now option -i is used if no script is given
Revision 2862 - Directory Listing
Modified Thu Jan 21 04:45:39 2010 UTC (11 years, 10 months ago) by gross
more review in the cookbook
Revision 2857 - Directory Listing
Modified Mon Jan 18 07:44:42 2010 UTC (11 years, 10 months ago) by gross
test for ApproximationOrder added and Transport type problem now choose reduced when necessary only.
Revision 2856 - Directory Listing
Modified Mon Jan 18 04:14:37 2010 UTC (11 years, 10 months ago) by gross
FunctionSpaces provide now some information about their approximation order.
Revision 2850 - Directory Listing
Modified Fri Jan 15 07:14:25 2010 UTC (11 years, 11 months ago) by gross
the powerlaw is working again. tests are switched on again.
Revision 2843 - Directory Listing
Modified Thu Jan 14 05:51:28 2010 UTC (11 years, 11 months ago) by gross
new compressible solver
Revision 2842 - Directory Listing
Modified Thu Jan 14 05:42:02 2010 UTC (11 years, 11 months ago) by caltinay
Changed domain::dump() to write out NodeDistribution & DofDistribution even if the current process has 0 nodes.
Revision 2841 - Directory Listing
Modified Thu Jan 14 01:02:56 2010 UTC (11 years, 11 months ago) by jfenwick
Unit tests for 2838 and adding setTags variant which takes a string instead of a tag num.
Revision 2828 - Directory Listing
Modified Tue Dec 22 01:24:40 2009 UTC (11 years, 11 months ago) by artak
Smoother for AMG now can be selected from python. Now only Jacobi and Gauss-Seidel are available as smoothers.
Revision 2816 - Directory Listing
Modified Thu Dec 10 02:09:43 2009 UTC (12 years ago) by artak
Standard coarsening is added to options list.
Revision 2814 - Directory Listing
Modified Tue Dec 8 01:50:29 2009 UTC (12 years ago) by caltinay
Removed minor code duplication.
Revision 2799 - Directory Listing
Modified Thu Dec 3 01:35:08 2009 UTC (12 years ago) by jfenwick
resolveGroup function added to python. Unit tests for resolveGroup, resolve and delay.
Revision 2794 - Directory Listing
Modified Wed Dec 2 00:43:17 2009 UTC (12 years ago) by gross
returning to the older version.
Revision 2793 - Directory Listing
Modified Tue Dec 1 06:10:10 2009 UTC (12 years ago) by gross
some new util functions
Revision 2779 - Directory Listing
Modified Thu Nov 26 03:51:15 2009 UTC (12 years ago) by caltinay
Fixed more instances of garbage=cstring+integer errors (d'oh!)
Revision 2778 - Directory Listing
Modified Thu Nov 26 01:50:30 2009 UTC (12 years ago) by caltinay
Fixed unintended pointer arithmetic with c-strings in MeshAdapter::dump() and shortened error messages while being at it.
Revision 2770 - Directory Listing
Modified Wed Nov 25 01:24:51 2009 UTC (12 years ago) by jfenwick
Removed buffer implementation of Lazy. Removed supporting Alloc/Free Sample buffer calls.
Revision 2760 - Directory Listing
Modified Thu Nov 19 05:22:45 2009 UTC (12 years ago) by artak
The first version of the new AMG preconditioner. It need a lot of polishing for efficiency. Old AMG now called AMLI preconditioner.
Revision 2756 - Directory Listing
Modified Thu Nov 19 00:40:02 2009 UTC (12 years ago) by gross
missing file added.
Revision 2755 - Directory Listing
Modified Wed Nov 18 23:19:32 2009 UTC (12 years ago) by caltinay
Reverted changes to Mesh_read from last commit. They break compilation with MPI and seem unintentional.
Revision 2754 - Directory Listing
Modified Wed Nov 18 07:44:26 2009 UTC (12 years ago) by gross
tests for macro elements in saveVTK added.
Revision 2752 - Directory Listing
Modified Wed Nov 18 06:01:18 2009 UTC (12 years ago) by caltinay
Fixed compilation error in mesh reader when using MPI.
Revision 2751 - Directory Listing
Modified Wed Nov 18 00:30:47 2009 UTC (12 years ago) by caltinay
Removed stray forward declaration.
Revision 2750 - Directory Listing
Modified Tue Nov 17 23:39:20 2009 UTC (12 years ago) by caltinay
Fixed some compilation errors with OpenMP introduced in last commit.
Revision 2749 - Directory Listing
Modified Tue Nov 17 07:34:16 2009 UTC (12 years ago) by gross
missing files.
Revision 2748 - Directory Listing
Modified Tue Nov 17 07:32:59 2009 UTC (12 years ago) by gross
Macro elements are implemented now. VTK writer for macro elements still needs testing.
Revision 2744 - Directory Listing
Modified Mon Nov 16 23:45:55 2009 UTC (12 years, 1 month ago) by caltinay
SaveVTK: exponent could have 3 digits so reserve enough space.
Revision 2743 - Directory Listing
Modified Mon Nov 16 05:28:47 2009 UTC (12 years, 1 month ago) by caltinay
Corrected memory allocation size for tensors in saveVTK. Fixes issue 460.
Revision 2742 - Directory Listing
Modified Thu Nov 12 06:03:37 2009 UTC (12 years, 1 month ago) by jfenwick
Merging changes from the lapack branch. The inverse() operation has been moved into c++. [No lazy support for this operation yet.] Optional Lapack support has been added for matrices larger than 3x3. service0 is set to use mkl_lapack.
Revision 2732 - Directory Listing
Modified Mon Oct 26 01:11:31 2009 UTC (12 years, 1 month ago) by jfenwick
Fixed segfault in debug+omp tests. Cause: variable used in parallel section not declared shared.
Revision 2730 - Directory Listing
Modified Thu Oct 22 01:50:27 2009 UTC (12 years, 1 month ago) by artak
order member variable added to the tests.
Revision 2725 - Directory Listing
Modified Wed Oct 21 23:44:06 2009 UTC (12 years, 1 month ago) by artak
AMG unit tests are disabled for 2-nd order elements.
Revision 2722 - Directory Listing
Modified Fri Oct 16 06:45:01 2009 UTC (12 years, 2 months ago) by gross
First steps towards macro elements. at the monent a macro element is identical to its counterpart of 2nd order.
Revision 2719 - Directory Listing
Modified Wed Oct 14 06:38:03 2009 UTC (12 years, 2 months ago) by gross
a new Stokes solver added
Revision 2676 - Directory Listing
Modified Mon Sep 21 08:06:37 2009 UTC (12 years, 2 months ago) by gross
FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value
Revision 2675 - Directory Listing
Modified Mon Sep 21 02:32:17 2009 UTC (12 years, 2 months ago) by gross
getMinValue added to the fault system.
Revision 2663 - Directory Listing
Modified Tue Sep 15 06:04:44 2009 UTC (12 years, 3 months ago) by gross
finally there is a 3D version for the fault system class
Revision 2654 - Directory Listing
Modified Tue Sep 8 07:11:12 2009 UTC (12 years, 3 months ago) by gross
2D fault systems are now working. 3D still needs work.
Revision 2653 - Directory Listing
Modified Tue Sep 8 04:26:30 2009 UTC (12 years, 3 months ago) by jfenwick
Fix bug in maxGlobalDataPoint and minGlobalDataPoint. They now give the correct answers and the datapoint ids returned are globally correct. Removed some #defines from before COW Removed hasNoSamples() - I don't trust myself to use that properly let alone anybody else.
Revision 2647 - Directory Listing
Modified Fri Sep 4 05:25:25 2009 UTC (12 years, 3 months ago) by gross
fault system add. There is still an example for the usage missing.
Revision 2646 - Directory Listing
Modified Fri Sep 4 00:13:00 2009 UTC (12 years, 3 months ago) by jfenwick
Unit tests and user doco for interpolation and saveCSV
Revision 2644 - Directory Listing
Modified Wed Sep 2 04:14:03 2009 UTC (12 years, 3 months ago) by jfenwick
Add unit tests for saveDataCSV which should be ready for use now. Keyword args are now output in sorted order. Removed some unneeded functions.
Revision 2642 - Directory Listing
Modified Tue Sep 1 04:15:50 2009 UTC (12 years, 3 months ago) by jfenwick
pre cleanup
Revision 2641 - Directory Listing
Modified Mon Aug 31 07:41:49 2009 UTC (12 years, 3 months ago) by jfenwick
Fixed some of my stupids related to MPI compile errors.
Revision 2640 - Directory Listing
Modified Mon Aug 31 06:22:10 2009 UTC (12 years, 3 months ago) by jfenwick
Adding getMPIComm
Revision 2635 - Directory Listing
Modified Thu Aug 27 04:54:41 2009 UTC (12 years, 3 months ago) by jfenwick
A bunch of changes related to saveDataCSV. [Not completed or unit tested yet] Added saveDataCSV to util.py AbstractDomain (and MeshAdapter) have a commonFunctionSpace method to take a group of FunctionSpaces and return something they can all be interpolated to. Added pointToStream() in DataTypes to help print points. added actsConstant() to data - required because DataConstant doesn't store samples the same way other Data do.
Revision 2628 - Directory Listing
Modified Tue Aug 25 03:50:00 2009 UTC (12 years, 3 months ago) by jfenwick
Fixed linkage on getTestDomainFunctionSpace. added Data.interpolateTable to perform 2D interpolation. It needs better unit tests though.
Revision 2627 - Directory Listing
Modified Mon Aug 24 01:57:34 2009 UTC (12 years, 3 months ago) by gross
some bugs in pycad fixed.
Revision 2625 - Directory Listing
Modified Fri Aug 21 06:30:25 2009 UTC (12 years, 3 months ago) by jfenwick
Merging changes from new doco branch. All docstrings are now in reStructured text. A few email addresses have been fixes as well.
Revision 2620 - Directory Listing
Modified Thu Aug 20 06:24:00 2009 UTC (12 years, 3 months ago) by gross
some small additions to pycad to make life a bit easier.
Revision 2608 - Directory Listing
Modified Tue Aug 18 01:25:18 2009 UTC (12 years, 3 months ago) by jfenwick
Updating Lutz' email
Revision 2596 - Directory Listing
Modified Thu Aug 6 03:09:03 2009 UTC (12 years, 4 months ago) by lgao
Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)
Revision 2595 - Directory Listing
Modified Thu Aug 6 00:49:09 2009 UTC (12 years, 4 months ago) by gross
there was wrong test which triggered an excpetion in some cases where things were actually right
Revision 2564 - Directory Listing
Modified Tue Jul 28 04:46:38 2009 UTC (12 years, 4 months ago) by gross
reduced PDE solutions added to topography
Revision 2563 - Directory Listing
Modified Tue Jul 28 03:50:45 2009 UTC (12 years, 4 months ago) by gross
reengineered version of the mountain class so it becomes easier to use for the convection code
Revision 2561 - Directory Listing
Modified Mon Jul 27 07:38:45 2009 UTC (12 years, 4 months ago) by gross
small bug in the calculation of the errors fixed.
Revision 2554 - Directory Listing
Modified Fri Jul 24 05:38:54 2009 UTC (12 years, 4 months ago) by gross
bug with MKL call fixed.
Revision 2551 - Directory Listing
Modified Thu Jul 23 09:19:15 2009 UTC (12 years, 4 months ago) by gross
a problem with the sparse matrix unrolling fixed.
Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (12 years, 4 months ago) by jfenwick
Remainder of copyright date fixes
Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (12 years, 4 months ago) by jfenwick
Updating copyright notices
Revision 2534 - Directory Listing
Modified Thu Jul 16 06:49:19 2009 UTC (12 years, 5 months ago) by caltinay
Changed examples, tests and tutorials to save VTK files as .vtu instead .xml. Visit doesn't know what to do with xml's and vtu is the proper extension anyway.
Revision 2533 - Directory Listing
Modified Wed Jul 15 05:57:01 2009 UTC (12 years, 5 months ago) by gross
finley delivers now a status identifier of the mesh.
Revision 2524 - Directory Listing
Modified Wed Jul 8 00:39:26 2009 UTC (12 years, 5 months ago) by artak
Minimum size of the coarsest level matrix option added to solver options
Revision 2521 - Directory Listing
Modified Tue Jul 7 00:08:58 2009 UTC (12 years, 5 months ago) by jfenwick
Modified Lazy so that resolving a single sample uses the node cache method. Fixed some doxygen problems.
Revision 2519 - Directory Listing
Modified Mon Jul 6 00:43:08 2009 UTC (12 years, 5 months ago) by jfenwick
Correcting some doxygen errors
Revision 2518 - Directory Listing
Modified Fri Jul 3 07:43:11 2009 UTC (12 years, 5 months ago) by gross
bug in setNewX fixed: now it is made sure that the FunctionSpace of the new coordinates is correct.
Revision 2511 - Directory Listing
Modified Thu Jul 2 05:16:19 2009 UTC (12 years, 5 months ago) by gross
more openmp
Revision 2502 - Directory Listing
Modified Tue Jun 30 05:49:22 2009 UTC (12 years, 5 months ago) by gross
tests for examples added. utest is not working yet.
Revision 2487 - Directory Listing
Modified Tue Jun 23 04:26:07 2009 UTC (12 years, 5 months ago) by jfenwick
Fixed const-ness on some return values. Null-Domain now reports tag one as being in use.
Revision 2484 - Directory Listing
Modified Mon Jun 22 04:22:19 2009 UTC (12 years, 5 months ago) by gross
numarray removed from docu; Locator revised.
Revision 2474 - Directory Listing
Modified Tue Jun 16 06:32:15 2009 UTC (12 years, 6 months ago) by gross
linearPDEs has is now using the SolverOptions class to talk to PASO
Revision 2468 - Directory Listing
Modified Thu Jun 11 02:55:51 2009 UTC (12 years, 6 months ago) by gross
some more work toward numpy
Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (12 years, 6 months ago) by jfenwick
Merging changes from numpy branch.
Revision 2445 - Directory Listing
Modified Fri May 29 03:23:25 2009 UTC (12 years, 6 months ago) by gross
some improvement on convection which ios now working again
Revision 2440 - Directory Listing
Modified Wed May 27 08:45:55 2009 UTC (12 years, 6 months ago) by gross
convection works now again.
Revision 2438 - Directory Listing
Modified Tue May 26 02:26:52 2009 UTC (12 years, 6 months ago) by gross
new version of power law (blame Hans)
Revision 2432 - Directory Listing
Modified Wed May 20 06:06:20 2009 UTC (12 years, 6 months ago) by gross
power law and incompressible flow is running now
Revision 2425 - Directory Listing
Modified Thu May 14 09:06:35 2009 UTC (12 years, 7 months ago) by gross
bug in getListOfTags fixed and some tested added
Revision 2422 - Directory Listing
Modified Thu May 14 03:17:28 2009 UTC (12 years, 7 months ago) by gross
bug in testing saveVTK fixed
Revision 2421 - Directory Listing
Modified Thu May 14 02:29:06 2009 UTC (12 years, 7 months ago) by gross
vtk writer supports now meta data and meta data schema
Revision 2419 - Directory Listing
Modified Thu May 14 01:56:18 2009 UTC (12 years, 7 months ago) by jfenwick
Use os.path.join instead of os.sep in tests If you can read this message it means svn commit mails are working again. ... Or you are looking at the logs
Revision 2416 - Directory Listing
Modified Wed May 13 06:03:59 2009 UTC (12 years, 7 months ago) by gross
* fix Windows MPI case: export system variables * define ESCRIPT_NUM_PROC and ESCRIPT_NUM_NODES * cleanup using os.path.join()
Revision 2389 - Directory Listing
Modified Wed Apr 15 06:46:01 2009 UTC (12 years, 8 months ago) by gross
some minor fixes.
Revision 2386 - Directory Listing
Modified Wed Apr 15 03:54:25 2009 UTC (12 years, 8 months ago) by gross
some minor fixes
Revision 2385 - Directory Listing
Modified Wed Apr 15 03:52:38 2009 UTC (12 years, 8 months ago) by gross
two fixes dealing with zero samples under MPI
Revision 2379 - Directory Listing
Modified Thu Apr 9 07:36:55 2009 UTC (12 years, 8 months ago) by gross
type fixed.
Revision 2368 - Directory Listing
Modified Mon Apr 6 05:05:35 2009 UTC (12 years, 8 months ago) by gross
some fixes for MKL and Mpisize>1
Revision 2358 - Directory Listing
Modified Wed Apr 1 22:25:24 2009 UTC (12 years, 8 months ago) by gross
mpi is not really ready yet.
Revision 2344 - Directory Listing
Modified Mon Mar 30 02:13:58 2009 UTC (12 years, 8 months ago) by jfenwick
Change __url__ to launchpad site
Revision 2337 - Directory Listing
Modified Thu Mar 26 07:07:42 2009 UTC (12 years, 8 months ago) by gross
Transport class uses now useBackwardEuler rather than the mysterious theta.
Revision 2330 - Directory Listing
Modified Mon Mar 23 01:18:03 2009 UTC (12 years, 8 months ago) by artak
RILU changed to Jacobi in accordance with mantis bug reported a while ago
Revision 2325 - Directory Listing
Modified Thu Mar 19 05:32:13 2009 UTC (12 years, 8 months ago) by gross
tests for Lame equation added.
Revision 2323 - Directory Listing
Modified Thu Mar 19 04:23:32 2009 UTC (12 years, 8 months ago) by gross
test for Helmholtz added
Revision 2322 - Directory Listing
Modified Thu Mar 19 04:13:21 2009 UTC (12 years, 8 months ago) by gross
ops
Revision 2320 - Directory Listing
Modified Thu Mar 19 03:40:16 2009 UTC (12 years, 8 months ago) by gross
some modifictaions to make sure that Mesh_merge.c Mesh_glueFaces.c Mesh_joinFaces.c reject to work under MPI
Revision 2319 - Directory Listing
Modified Thu Mar 19 03:19:41 2009 UTC (12 years, 8 months ago) by gross
some more work on tests on MPI
Revision 2315 - Directory Listing
Modified Wed Mar 18 00:38:48 2009 UTC (12 years, 9 months ago) by gross
fixes for MPI
Revision 2311 - Directory Listing
Modified Mon Mar 16 23:00:08 2009 UTC (12 years, 9 months ago) by jfenwick
Fixed a bug causing Mac crashes.
Revision 2310 - Directory Listing
Modified Mon Mar 16 04:07:43 2009 UTC (12 years, 9 months ago) by gross
some modifications to the test to fix a problem cased by reordering in MPI
Revision 2308 - Directory Listing
Modified Mon Mar 16 01:20:56 2009 UTC (12 years, 9 months ago) by gross
size_t may be 64 bits which is incompatible to MPI_INT. This problem is fixed by inserting a cast in Mesh_read.c. Moreover a fix has been added making sure that gmsh and triangle are executed on one processor only.
Revision 2301 - Directory Listing
Modified Thu Mar 12 01:35:26 2009 UTC (12 years, 9 months ago) by gross
test for power law added
Revision 2271 - Directory Listing
Modified Mon Feb 16 05:08:29 2009 UTC (12 years, 10 months ago) by jfenwick
Merging version 2269 to trunk
Revision 2264 - Directory Listing
Modified Wed Feb 11 06:48:28 2009 UTC (12 years, 10 months ago) by gross
a new darcy flux solver.
Revision 2257 - Directory Listing
Modified Mon Feb 9 07:06:00 2009 UTC (12 years, 10 months ago) by gross
test can now deal with contact elements
Revision 2256 - Directory Listing
Modified Mon Feb 9 06:20:32 2009 UTC (12 years, 10 months ago) by jfenwick
Throw an exception if AbstractDomain::MPIBarrier is called (This shouldn't happen). Added Barrier to saveVTK. Replaced some misused keywords.
Revision 2251 - Directory Listing
Modified Fri Feb 6 06:50:39 2009 UTC (12 years, 10 months ago) by gross
new compressible flow solver
Revision 2249 - Directory Listing
Modified Fri Feb 6 00:11:51 2009 UTC (12 years, 10 months ago) by jfenwick
Fixed some pathing issues.
Revision 2243 - Directory Listing
Modified Wed Feb 4 05:22:28 2009 UTC (12 years, 10 months ago) by gross
small bug fixed which could lead to a seg fault
Revision 2242 - Directory Listing
Modified Wed Feb 4 05:04:20 2009 UTC (12 years, 10 months ago) by jfenwick
Development continues on unit test framework
Revision 2239 - Directory Listing
Modified Wed Feb 4 00:42:46 2009 UTC (12 years, 10 months ago) by jfenwick
Added pyvisi and c++ unit tests to build of utest.sh
Revision 2235 - Directory Listing
Modified Tue Feb 3 01:47:47 2009 UTC (12 years, 10 months ago) by jfenwick
Added support for generating non-scons test scripts
Revision 2234 - Directory Listing
Modified Mon Feb 2 05:30:30 2009 UTC (12 years, 10 months ago) by artak
two new tests for Mountains class are added.
Revision 2231 - Directory Listing
Modified Fri Jan 30 05:16:05 2009 UTC (12 years, 10 months ago) by jfenwick
Modified scons files to compile c++ unit tests with the same options used to compile the libraries.
Revision 2208 - Directory Listing
Modified Mon Jan 12 06:37:07 2009 UTC (12 years, 11 months ago) by gross
more work on the dary solver
Revision 2199 - Directory Listing
Modified Thu Jan 8 06:10:52 2009 UTC (12 years, 11 months ago) by jfenwick
Misc fixes: Added some svn:ignore properties for output files that were cluttering things up. Lazy fixes: Fixed shape calculations for TRACE and TRANSPOSE for rank>2. Adjusted unit test accordingly. As a Temporary change to DataC.cpp to test for lazy data in DataC's expanded check. This is wrong but would only affect people using lazy data. The proper fix will come when the numarray removal code moves over from the branch. Made tensor product AUTOLAZY capable. Fixed some bugs resolving tensor products (incorrect offsets in buffers). Macro'd some stray couts. - It appears that AUTOLAZY now passes all unit tests. - It will not be _really_ safe for general use until I can add COW. - (Everything's better with COW)
Revision 2197 - Directory Listing
Modified Thu Jan 8 05:49:16 2009 UTC (12 years, 11 months ago) by gross
modifications to the way cosntraints are handeled in the Transport problem
Revision 2189 - Directory Listing
Modified Tue Dec 23 04:24:37 2008 UTC (12 years, 11 months ago) by caltinay
Changed generate_dumps script to use saveESD().
Revision 2180 - Directory Listing
Modified Thu Dec 18 00:30:25 2008 UTC (12 years, 11 months ago) by caltinay
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 3). With boost 1.37 all epydoc warnings are gone now. This commit should be a no-op.
Revision 2172 - Directory Listing
Modified Wed Dec 17 08:30:12 2008 UTC (13 years ago) by phornby
Fixed some signed/unsigned comparisons occurin g via MAX(). They were harmless anyway.
Revision 2156 - Directory Listing
Modified Mon Dec 15 05:09:02 2008 UTC (13 years ago) by gross
some modifications to the iterative solver to make them easier to use. There are also improved versions of the Darcy flux solver and the incompressible solver.
Revision 2151 - Directory Listing
Modified Wed Dec 10 06:34:25 2008 UTC (13 years ago) by caltinay
Moved common functionality from saveDX/VTK into private method. May be used for future save* methods.
Revision 2150 - Directory Listing
Modified Wed Dec 10 05:57:12 2008 UTC (13 years ago) by caltinay
Removed unnecessary "magic name length".
Revision 2149 - Directory Listing
Modified Wed Dec 10 05:08:17 2008 UTC (13 years ago) by caltinay
Fixed a typo in error message.
Revision 2141 - Directory Listing
Modified Tue Dec 9 04:32:32 2008 UTC (13 years ago) by caltinay
saveVTK: Reviewed and changed parts of this function due to several issues. Confirmed that it's still working using finley/test/python/generate_dumps.py (manually inserted saveVTK) with and without MPI on 1 and 4 processors. Changes include: - removed unnecessary USE_VTK check - we are not using any VTK functions - fixed writing of Rec9 & Hex27 connectivity data in MPI mode - fixed some cases where the file was not closed and memory was not freed - replaced many instances of fprintf by fputs (simple strings) - some minor optimizations by moving or initializing variables and combining if-clauses - got rid of ~300 lines of code and switched to consistent indentation making the file a bit better readable
Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (13 years ago) by gross
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. Some documentation for both classes has been added. The convection code is only linear at the moment.
Revision 2094 - Directory Listing
Modified Tue Nov 25 05:45:41 2008 UTC (13 years ago) by caltinay
saveVTK: Close the file even if error is set upon completion. Note that in some places the function still returns without proper clean up but this won't be fixed until the rewrite to avoid more mess in the code.
Revision 2087 - Directory Listing
Modified Mon Nov 24 04:51:30 2008 UTC (13 years ago) by jfenwick
Addressing mantis issue #221. Interpolation.. and probeInterpolation.. now "work" for the NullDomain. Work means throw a descriptive exception if you try to move into or out of the NullDomain. The bad_cast exception related to this has been fixed.
Revision 2078 - Directory Listing
Modified Thu Nov 20 16:10:10 2008 UTC (13 years ago) by phornby
Two changes. 1. Move blocktimer from escript to esysUtils. 2. Make it possible to link to paso as a DLL or .so. Should have no effect on 'nix's In respect of 1., blocktimer had begun to spring up everywhere, so for the moment I thought it best to move it to the only other library that pops up all over the place. In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast option, which does aggressive multi-file optimisations. Even in its current form, it either vectorises or parallelises hundreds more loops in the esys system than appear in the pragmas. In achieving 2. I have not been too delicate in adding PASO_DLL_API declarations to the .h files in paso/src. Only toward the end of the process of the conversion, when the number of linker errors dropped below 20, say, did I choosy about what functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines declared as external functions symbols that are in fact internal to the paso DLL. Why is this an issue? It prevents the intelc compiler from getting aggressive on the paso module. With pain there is sometimes gain. At least all the DLL rules in windows give good (non-microsoft) compiler writers a chance to really shine. So, if you should see a PASO_DLL_API on a function in a paso header file, and think to yourself, "that function is only called in paso, why export it?", then feel free to delete the PASO_DLL_API export declaration. Here's hoping for no breakage.....
Revision 2076 - Directory Listing
Modified Thu Nov 20 12:34:17 2008 UTC (13 years ago) by phornby
I may get into trouble for this. boost-python 1.34 does have a docstring_options class, but does not have a 3 argument constructor for it. So the test has been modified to #if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1) If you wish to make things more delicate, one can define a 2 argument construction of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly. Hope that this has not broken anything for anyone else. The SVN logs suggest this is a little fragile..... Also, please be aware that much of our chemistry interface code, that we wish to use with escript, makes extensive use of boost python. Having two different boost versions mucking with the python interpreter sounds like a really bad idea, I'm sure you'll agree. The problem is that it is not a simple task for us to build new versions of boost-python on all our platforms. Consequently, it would be nice to be informed when you guys intend to upgrade a support library of this nature so that we can plan and allocate resources to keep up. Cheers.
Revision 2069 - Directory Listing
Modified Thu Nov 20 09:13:19 2008 UTC (13 years ago) by phornby
Another ElementTypeId TypeId=NoType; fix.
Revision 2064 - Directory Listing
Modified Thu Nov 20 04:06:34 2008 UTC (13 years ago) by jfenwick
docstring_options was added in boost 1.34 - macro'd it out if you are compiling earlier than that.
Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (13 years ago) by jfenwick
Fixing some warnings from epydoc. Disabled c++ signatures in python docstrings. Removed references to Bruce in epydoc and the users guide.
Revision 2059 - Directory Listing
Modified Mon Nov 17 22:57:50 2008 UTC (13 years ago) by gross
changes as suggested by phornby
Revision 2052 - Directory Listing
Modified Mon Nov 17 11:15:07 2008 UTC (13 years ago) by phornby
MALLOC_CHUNK -> malloc_chunk in case there is a name-space collision with a macro at some time in the future.
Revision 2041 - Directory Listing
Modified Sat Nov 15 12:45:15 2008 UTC (13 years, 1 month ago) by phornby
ESYS_STATIC_LIB no longer needs to be defined in SConscript files.
Revision 2034 - Directory Listing
Modified Thu Nov 13 03:03:42 2008 UTC (13 years, 1 month ago) by artak
variable <set> is initilized to get rid of compiler warnning errors. finley/src/Quadrature.c
Revision 2033 - Directory Listing
Modified Wed Nov 12 08:14:11 2008 UTC (13 years, 1 month ago) by phornby
As in the last message, add an extra CPPDEFINE to py_local_wrapper_env
Revision 2031 - Directory Listing
Modified Wed Nov 12 08:02:33 2008 UTC (13 years, 1 month ago) by phornby
Need finer control than INTERFACE_STATIC_LIB could exert. Now there is a XXX_STATIC_LIB for each lib.
Revision 2030 - Directory Listing
Modified Wed Nov 12 07:34:08 2008 UTC (13 years, 1 month ago) by phornby
Fix the undef'fing of _DLL_API in windows case.
Revision 2029 - Directory Listing
Modified Wed Nov 12 07:27:05 2008 UTC (13 years, 1 month ago) by phornby
Test a more elegant way of handling XXX_DLL_API macros.
Revision 2027 - Directory Listing
Modified Tue Nov 11 02:52:24 2008 UTC (13 years, 1 month ago) by phornby
Ensure ESCRIPT_EXPORTS is defined only while compiling escript on windows. A similar comment applies to FINLEY_EXPORTS. SConstruct: Fixed a comment. reformatted the Export() call, and added IS_WINDOWS_PLATFORM to the exports.
Revision 2025 - Directory Listing
Modified Tue Nov 11 00:18:33 2008 UTC (13 years, 1 month ago) by jfenwick
__const on some strings
Revision 2019 - Directory Listing
Modified Mon Nov 10 13:49:00 2008 UTC (13 years, 1 month ago) by phornby
Yet another concerted effort to handle missing macro arguments in a portable way.
Revision 2018 - Directory Listing
Modified Mon Nov 10 13:31:43 2008 UTC (13 years, 1 month ago) by phornby
Only import mathimf.h on win32 with intelc. Allow others to use the standard math.h change the #ifndef const -> #ifndef __const (oops!!)
Revision 2006 - Directory Listing
Modified Mon Nov 10 03:07:08 2008 UTC (13 years, 1 month ago) by jfenwick
Updating svn:ignore properties.
Revision 1991 - Directory Listing
Modified Fri Nov 7 04:32:38 2008 UTC (13 years, 1 month ago) by caltinay
finley: Constify two variables.
Revision 1990 - Directory Listing
Modified Fri Nov 7 04:19:07 2008 UTC (13 years, 1 month ago) by ksteube
Changes to avoid compiler warnings Finley files now pass -Wall on gcc 4.3.2 saveVTK.c: replaced printf(string) with printf("%s", string) MeshAdapterFactory.cpp: moved a few lines to avoid possible use of uninitialized vars MeshAdapter.cpp: initialized ncdims in mesh dump There is still a warning from a boost include file Revision 1986 - Directory Listing
Modified Thu Nov 6 23:33:14 2008 UTC (13 years, 1 month ago) by jfenwick
Warning removal
Revision 1985 - Directory Listing
Modified Thu Nov 6 22:13:54 2008 UTC (13 years, 1 month ago) by caltinay
finley: Fixed compiler warnings (uninitialized vars). This is only a temporary hack. At a later stage this beast will be rewritten...
Revision 1981 - Directory Listing
Modified Thu Nov 6 05:27:33 2008 UTC (13 years, 1 month ago) by jfenwick
More warning removal.
Revision 1965 - Directory Listing
Modified Wed Nov 5 03:24:09 2008 UTC (13 years, 1 month ago) by caltinay
Fixed working directory of the seismic_wave example.
Revision 1942 - Directory Listing
Modified Wed Oct 29 03:29:35 2008 UTC (13 years, 1 month ago) by phornby
remove unused rtmp var.
Revision 1937 - Directory Listing
Modified Tue Oct 28 01:26:55 2008 UTC (13 years, 1 month ago) by ksteube
Created a mid-sized test suite 'scalable_tests' as an alternative to 'all_tests'. These run on small-ish systems and also on all 512 cores of Savanna. Most features are covered, but it's better to use 'all_tests'.
Revision 1920 - Directory Listing
Modified Thu Oct 23 10:05:27 2008 UTC (13 years, 1 month ago) by phornby
remove unused vars.
Revision 1919 - Directory Listing
Modified Thu Oct 23 10:03:10 2008 UTC (13 years, 1 month ago) by phornby
Remove un-used vars introduced by my _WIN32 compilation branch. This is a checkin to allow a test of both compilation brabches.
Revision 1912 - Directory Listing
Modified Thu Oct 23 05:08:31 2008 UTC (13 years, 1 month ago) by ksteube
Finished wrapper script by setting PATH. The wrapper script reproduces the environment of the person who built the software + values specified in his hostname_options.py file. A user can run a python script without setting any environment variables or loading any SGI modules.
Revision 1907 - Directory Listing
Modified Wed Oct 22 11:41:18 2008 UTC (13 years, 1 month ago) by phornby
Mesh_read.c - remove a debug printout introduced by me (oops). Pattern_coupling.c - remove declaration of naib where it was not used, and remove naib frpm omp pragmas where it was not declared, and not used. Apparently cognac.ivec.org did not like this??
Revision 1900 - Directory Listing
Modified Mon Oct 20 07:33:42 2008 UTC (13 years, 1 month ago) by phornby
Fake commit to sync with my windows machine. Fix looks like like it worked on Dedbian. Thanks.
Revision 1896 - Directory Listing
Modified Sun Oct 19 23:16:21 2008 UTC (13 years, 1 month ago) by gross
small fixes.
Revision 1895 - Directory Listing
Modified Sat Oct 18 11:06:38 2008 UTC (13 years, 1 month ago) by phornby
Remove the amalgamated test suite because it consumes too much resource on winblows
Revision 1894 - Directory Listing
Modified Sat Oct 18 11:00:08 2008 UTC (13 years, 1 month ago) by phornby
Break run_linearPDEsOnFinley.py into 3 separate test modules to avoid crashes on winblows
Revision 1893 - Directory Listing
Modified Fri Oct 17 09:59:39 2008 UTC (13 years, 2 months ago) by gross
brakets in SCAN error detection were missing.
Revision 1887 - Directory Listing
Modified Wed Oct 15 03:26:25 2008 UTC (13 years, 2 months ago) by ksteube
Fixed two typos that stopped the test suite from running. Also, gcc 4.3.2 issued several warnings not seen before: ignoring the return value of fscanf and using the wrong format with printf.
Revision 1880 - Directory Listing
Modified Tue Oct 14 04:23:21 2008 UTC (13 years, 2 months ago) by caltinay
s/==/=/ in one more place in generate_dumps.py
Revision 1878 - Directory Listing
Modified Tue Oct 14 03:39:13 2008 UTC (13 years, 2 months ago) by gross
new version of JacobiFree Newton GMRES + test added.
Revision 1877 - Directory Listing
Modified Tue Oct 14 02:58:39 2008 UTC (13 years, 2 months ago) by ksteube
convection.py checkpointing uses mkdir/rmdir, and under MPI there was a race condition. mkdir needs to be run on only one CPU and then a barrier to prevent working processors from using the directory before it exists. Added methods domain.MPIBarrier and domain.onMasterProcessor() to implement this technique. A more general solution might be possible in the future.
Revision 1876 - Directory Listing
Modified Mon Oct 13 10:19:17 2008 UTC (13 years, 2 months ago) by phornby
ftell lies on windows, so there is a win32 branch that reads the tag lines char by char.
Revision 1872 - Directory Listing
Modified Mon Oct 13 00:18:55 2008 UTC (13 years, 2 months ago) by jfenwick
Closing the moreshared branch
Revision 1869 - Directory Listing
Modified Thu Oct 9 08:34:40 2008 UTC (13 years, 2 months ago) by gross
typo fixed.
Revision 1867 - Directory Listing
Modified Thu Oct 9 05:35:24 2008 UTC (13 years, 2 months ago) by ksteube
New method for unit testing to compare two saveVTK files. Can detect same-ness even if the nodes are re-ordered. To do: issue with contact elements in that identical nodes confuses test for node re-ordering.
Revision 1866 - Directory Listing
Modified Thu Oct 9 04:01:06 2008 UTC (13 years, 2 months ago) by ksteube
Repair to saveVTK similar to revision 1677 (there we got the number of offsets correct and in this revision we got the number of types correct). In case of MPI > 1 do not run saveDX tests since saveDX is not MPI parallel.
Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (13 years, 2 months ago) by gross
first version of testing for transport solver.
Revision 1856 - Directory Listing
Modified Tue Oct 7 07:10:47 2008 UTC (13 years, 2 months ago) by gross
The NC dump tests work now with MPI. In fact the old test did not exactly what it supposed to
Revision 1854 - Directory Listing
Modified Tue Oct 7 01:38:55 2008 UTC (13 years, 2 months ago) by ksteube
local_NE0 typo
Revision 1847 - Directory Listing
Modified Fri Oct 3 06:45:34 2008 UTC (13 years, 2 months ago) by phornby
OK, these get the blahcpp.so names correct now.
Revision 1845 - Directory Listing
Modified Fri Oct 3 05:23:47 2008 UTC (13 years, 2 months ago) by gross
some naming problem for the installation of escriptcpp and finleycpp. Apparently this came is trough some mofifications in windows
Revision 1841 - Directory Listing
Modified Fri Oct 3 03:57:52 2008 UTC (13 years, 2 months ago) by gross
modification on LinearPDE class and a first version of Transport class
Revision 1840 - Directory Listing
Modified Fri Oct 3 03:16:11 2008 UTC (13 years, 2 months ago) by phornby
These now install the correct .pyd files on windows.
Revision 1839 - Directory Listing
Modified Fri Oct 3 02:06:00 2008 UTC (13 years, 2 months ago) by phornby
temporary fix to get run_tests working
Revision 1830 - Directory Listing
Modified Thu Oct 2 06:51:48 2008 UTC (13 years, 2 months ago) by ksteube
Tests using JoinFaces() and domain.write() will not work under MPI and must be disabled for num procs > 1
Revision 1829 - Directory Listing
Modified Thu Oct 2 05:40:30 2008 UTC (13 years, 2 months ago) by ksteube
Adjusted tests for MPI. Enabled two tests in run_inputOutput.py for order=2 after recent bugfix.
Revision 1827 - Directory Listing
Modified Thu Oct 2 04:28:07 2008 UTC (13 years, 2 months ago) by ksteube
MPI parallelized dump/load for Constant and Tagged data. run_escriptOnFinley.py runs hybrid MPI/OpenMP.
Revision 1823 - Directory Listing
Modified Wed Oct 1 05:56:05 2008 UTC (13 years, 2 months ago) by artak
GS preconditioner now works for block_size 2 and 3 as well. Sweep parameter introdiced, but not working yet
Revision 1819 - Directory Listing
Modified Tue Sep 30 05:58:06 2008 UTC (13 years, 2 months ago) by artak
Firs version of symmetric Gauss-Seidel preconditioner with coloring
Revision 1818 - Directory Listing
Modified Tue Sep 30 04:09:13 2008 UTC (13 years, 2 months ago) by gross
chnaged the wrong line
Revision 1816 - Directory Listing
Modified Tue Sep 30 03:40:51 2008 UTC (13 years, 2 months ago) by gross
bug with MPI fixed (relevant for cases of n0 and n1 < num processors)
Revision 1815 - Directory Listing
Modified Tue Sep 30 02:10:32 2008 UTC (13 years, 2 months ago) by gross
tools to generate dump files for relevant data and mesh types
Revision 1814 - Directory Listing
Modified Tue Sep 30 00:21:21 2008 UTC (13 years, 2 months ago) by gross
Contact elements have the right tyoe now.
Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (13 years, 2 months ago) by ksteube
Copyright updated in all files
Revision 1810 - Directory Listing
Modified Thu Sep 25 06:53:26 2008 UTC (13 years, 2 months ago) by ksteube
Updated copyright for a few remaining python files
Revision 1809 - Directory Listing
Modified Thu Sep 25 06:43:44 2008 UTC (13 years, 2 months ago) by ksteube
Copyright updated in all python files
Revision 1807 - Directory Listing
Modified Thu Sep 25 01:04:51 2008 UTC (13 years, 2 months ago) by ksteube
The new MPI parallel ReadMesh is now the default after having passed all tests both with and without MPI. If you have been using ReadMesh you should notice no difference. If you were using ReadMeshMPI then change to ReadMesh.
Revision 1805 - Directory Listing
Modified Wed Sep 24 23:39:00 2008 UTC (13 years, 2 months ago) by ksteube
Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info. Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.
Revision 1804 - Directory Listing
Modified Wed Sep 24 07:52:19 2008 UTC (13 years, 2 months ago) by gross
a robister version of the upwinding scheme
Revision 1802 - Directory Listing
Modified Tue Sep 23 01:03:29 2008 UTC (13 years, 2 months ago) by jfenwick
Added canTag methods to FunctionSpace and AbstractDomain (and its offspring). This checks to see if the domain supports tags for the given type of function space. Constructors for DataTagged now throw exceptions if you attempt to make a DataTagged with a FunctionSpace which does not support tags. To allow the default constructor to work, NullDomain has a single functioncode which "supports" tagging. Fixed a bug in DataTagged::toString and DataTypes::pointToString. Added FunctionSpace::getListOfTagsSTL. algorithm(DataTagged, BinaryFunction) in DataAlgorithm now only processes tags known to be in use. This fixes mantis issue #0000186. Added comment to Data.h intro warning about holding references if the underlying DataAbstract changes. _python_ unit tests have been updated to test TaggedData with invalid FunctionSpaces and to give the correct answers to Lsup etc.
Revision 1801 - Directory Listing
Modified Fri Sep 19 01:37:09 2008 UTC (13 years, 2 months ago) by ksteube
Fixed serialization of I/O for MPI...code didn't compile without MPI
Revision 1800 - Directory Listing
Modified Thu Sep 18 05:28:20 2008 UTC (13 years, 2 months ago) by ksteube
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors. Added domain method getMPIComm() to complement getMPISize() and getMPIRank().
Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (13 years, 3 months ago) by jfenwick
Merged noarrayview branch onto trunk.
Revision 1790 - Directory Listing
Modified Tue Sep 16 07:45:38 2008 UTC (13 years, 3 months ago) by gross
test is obsolet
Revision 1787 - Directory Listing
Modified Mon Sep 15 01:36:34 2008 UTC (13 years, 3 months ago) by artak
MINRES solver is added to escript. Additional 16 tests are added to run_simplesolve for MINRES and TFQMR solvers
Revision 1777 - Directory Listing
Modified Tue Sep 9 06:39:37 2008 UTC (13 years, 3 months ago) by ksteube
Implemented Lutz fix for MPI mesh dump/load using NetCDF
Revision 1776 - Directory Listing
Modified Tue Sep 9 06:03:53 2008 UTC (13 years, 3 months ago) by ksteube
Cleared away some debugging prints
Revision 1774 - Directory Listing
Modified Tue Sep 9 03:50:45 2008 UTC (13 years, 3 months ago) by gross
bug: unitialized values
Revision 1772 - Directory Listing
Modified Tue Sep 9 00:18:49 2008 UTC (13 years, 3 months ago) by ksteube
Added tests for reading a finley mesh and comparing it to a newly-created mesh of the same type Moved my mesh comparison function to be a class method
Revision 1771 - Directory Listing
Modified Mon Sep 8 22:47:55 2008 UTC (13 years, 3 months ago) by ksteube
Removed failing test until we fix a bug. Fixed several compiler warnings.
Revision 1770 - Directory Listing
Modified Mon Sep 8 06:58:47 2008 UTC (13 years, 3 months ago) by ksteube
Detects an array reference out of bounds when running run_inputOutput.py
Revision 1766 - Directory Listing
Modified Mon Sep 8 02:51:14 2008 UTC (13 years, 3 months ago) by gross
code formatting
Revision 1765 - Directory Listing
Modified Mon Sep 8 02:49:57 2008 UTC (13 years, 3 months ago) by gross
some fixes for the case of empty processor
Revision 1764 - Directory Listing
Modified Mon Sep 8 02:48:26 2008 UTC (13 years, 3 months ago) by gross
type for the non mpi case fixed.
Revision 1763 - Directory Listing
Modified Mon Sep 8 02:47:55 2008 UTC (13 years, 3 months ago) by gross
more code formatting
Revision 1762 - Directory Listing
Modified Mon Sep 8 02:42:39 2008 UTC (13 years, 3 months ago) by gross
some formatting
Revision 1760 - Directory Listing
Modified Mon Sep 8 02:35:56 2008 UTC (13 years, 3 months ago) by gross
some renaming of variables to clarify what is going on
Revision 1755 - Directory Listing
Modified Mon Sep 8 01:34:40 2008 UTC (13 years, 3 months ago) by ksteube
Added new field to NetCDF dump of mesh
Revision 1754 - Directory Listing
Modified Sun Sep 7 22:07:26 2008 UTC (13 years, 3 months ago) by ksteube
Added new test suite run_inputOutput.py to systematically test I/O. Can determine if two domains are same with Fourier analysis. Added new method getNumDataPointsGlobal to return number of DPs of a distributed mesh. Reading of tags in ReadMeshMPI failed occasionally, should be more robust now.
Revision 1753 - Directory Listing
Modified Sun Sep 7 22:01:23 2008 UTC (13 years, 3 months ago) by ksteube
Test suite fails due to missing arg in call to Finley_Mesh_createMappings. Added NULL arg, but still need to find proper fix as loadMesh does not work. Adjusted SConstruct to delete pythonMPI if not compiled for MPI.
Revision 1750 - Directory Listing
Modified Wed Sep 3 23:09:29 2008 UTC (13 years, 3 months ago) by gross
small bug fixed
Revision 1749 - Directory Listing
Modified Wed Sep 3 07:25:01 2008 UTC (13 years, 3 months ago) by gross
fixes a problem with the saveVTK writing under mpi
Revision 1748 - Directory Listing
Modified Wed Sep 3 06:10:39 2008 UTC (13 years, 3 months ago) by ksteube
MPI parallelism for Data().dump and load. Use multiple NetCDF files, one file per MPI process
Revision 1745 - Directory Listing
Modified Wed Sep 3 00:41:24 2008 UTC (13 years, 3 months ago) by ksteube
MPI mesh_read was crashing if tags not present
Revision 1744 - Directory Listing
Modified Tue Sep 2 07:39:18 2008 UTC (13 years, 3 months ago) by ksteube
Can now read and MPI distribute a finley mesh including the tags.
Revision 1743 - Directory Listing
Modified Tue Sep 2 00:54:05 2008 UTC (13 years, 3 months ago) by ksteube
Avoid crash due to zero-length writes in MPI_File_write_ordered. Write a space instead of empty string. The space will be at the end of a line and cause no problem.
Revision 1742 - Directory Listing
Modified Mon Sep 1 05:55:00 2008 UTC (13 years, 3 months ago) by gross
tests for VTK writer rec9 and Hex27 added
Revision 1741 - Directory Listing
Modified Mon Sep 1 04:06:41 2008 UTC (13 years, 3 months ago) by gross
VTK writer supports HEX27 and REC9 now.
Revision 1740 - Directory Listing
Modified Fri Aug 29 06:23:11 2008 UTC (13 years, 3 months ago) by gross
and some fixes for the GMSH reader
Revision 1739 - Directory Listing
Modified Fri Aug 29 06:19:53 2008 UTC (13 years, 3 months ago) by gross
Fix in the MPI mesh reader: Owner need to be set.
Revision 1738 - Directory Listing
Modified Fri Aug 29 05:06:45 2008 UTC (13 years, 3 months ago) by gross
some changes improving the robustness for MPI if the elements/processor is small
Revision 1736 - Directory Listing
Modified Fri Aug 29 02:23:16 2008 UTC (13 years, 3 months ago) by gross
This fixes a problem which is typically arising when using reduced order with MPI and a "small" number of elements per processor. In this case it can happen that the couple matrix is not using all entries sent to the processor. The old implementations assumed that the indices will cover the entire input. This assumption has been removed.
Revision 1735 - Directory Listing
Modified Fri Aug 29 00:18:26 2008 UTC (13 years, 3 months ago) by gross
This fixes a bug in the callculation of communication tables in particular for the data to be send away. The problem was that the previously used method based on the idea to use the elements stored on a processor to decide what to send away is not suitable for the reduced DOF. Now each processor sends a list of the DOFs it is expecting to its naighbours.
Revision 1733 - Directory Listing
Modified Thu Aug 28 01:46:07 2008 UTC (13 years, 3 months ago) by gross
bug fix: if the numer of elements to be generated suppose to be zero still face elements and nodes are generated. this is fixed now.
Revision 1732 - Directory Listing
Modified Wed Aug 27 05:47:03 2008 UTC (13 years, 3 months ago) by ksteube
MPI read of finley mesh file working except for a bug related to mesh_prepare
Revision 1725 - Directory Listing
Modified Tue Aug 26 03:31:49 2008 UTC (13 years, 3 months ago) by ksteube
MPI read of .fly mesh file: fixed bug in message size while fanning out elements
Revision 1723 - Directory Listing
Modified Fri Aug 22 04:24:19 2008 UTC (13 years, 3 months ago) by gross
some unnecessary code removed.
Revision 1722 - Directory Listing
Modified Fri Aug 22 04:20:30 2008 UTC (13 years, 3 months ago) by gross
The CSR matrix patters handed ober to ParMetis may not containn the main diagonal entry. This revisison is fixing the problem.
Revision 1720 - Directory Listing
Modified Fri Aug 22 00:24:35 2008 UTC (13 years, 3 months ago) by gross
PARAMETIS macro renamed to USE_PARAMETIS as set by scons
Revision 1716 - Directory Listing
Modified Thu Aug 21 05:03:49 2008 UTC (13 years, 3 months ago) by gross
getListOfTags method added to FunctionSpace class
Revision 1713 - Directory Listing
Modified Wed Aug 20 07:03:45 2008 UTC (13 years, 3 months ago) by ksteube
MPI read of mesh.fly: reduced memory requirements
Revision 1707 - Directory Listing
Modified Thu Aug 14 06:38:14 2008 UTC (13 years, 4 months ago) by ksteube
Fixed nightly tests for savanna (no longer running in PBS cause can't compile on compute node). Modified domain.print_mesh_info() to tell how many elements are owned by a node and how many are in the overlap. Instrumented the preconditioner step.
Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (13 years, 4 months ago) by ksteube
Branch scons-dev is hereby closed. Some parts of scons scripts have been re-written.
Revision 1703 - Directory Listing
Modified Thu Aug 14 05:34:25 2008 UTC (13 years, 4 months ago) by artak
TFQMR solver is added to PASO solver. It is not parallelised yet.
Revision 1694 - Directory Listing
Modified Fri Aug 8 04:27:46 2008 UTC (13 years, 4 months ago) by artak
test_NoPDE_vector_variable is changed to avoid 0/0 division
Revision 1677 - Directory Listing
Modified Mon Jul 28 06:36:19 2008 UTC (13 years, 4 months ago) by gross
bug in the MPI version of saveVTK fixed
Revision 1674 - Directory Listing
Modified Fri Jul 25 00:47:16 2008 UTC (13 years, 4 months ago) by artak
Command line options (-e NE and -s solver ) are added
Revision 1669 - Directory Listing
Modified Thu Jul 24 01:10:04 2008 UTC (13 years, 4 months ago) by gross
A problem with VTK writer and MPI is fixed: Apparently MPI_file_open does not "delete" the file which has the effect that if less date are written into the file as the file contained when opened bits of the previous containt remains in the file. This problem is fixed by deleting the file if it exists before open it with MPI. The additional function Paso_existFile needed to be added as there is no standart C function to test the exists of a file.
Revision 1665 - Directory Listing
Modified Wed Jul 23 03:23:03 2008 UTC (13 years, 4 months ago) by gross
bug in the MPI version of saveVTK fixed
Revision 1664 - Directory Listing
Modified Tue Jul 22 03:41:38 2008 UTC (13 years, 4 months ago) by ksteube
Install() on Mac OS was naming shared libs file.dylib...not OK for our libraries for python calling C++ (escriptcpp.so and finleycpp.so). This is because python's dlopen() calls only look for .so files.
Revision 1660 - Directory Listing
Modified Mon Jul 21 03:23:46 2008 UTC (13 years, 4 months ago) by ksteube
Some variables were not declared as a result of recent cleanup
Revision 1659 - Directory Listing
Modified Fri Jul 18 02:28:13 2008 UTC (13 years, 5 months ago) by gross
some first version of a robust level set
Revision 1650 - Directory Listing
Modified Tue Jul 15 08:58:22 2008 UTC (13 years, 5 months ago) by phornby
more care with m_t and diagS needed in the pragmas.
Revision 1649 - Directory Listing
Modified Tue Jul 15 08:41:02 2008 UTC (13 years, 5 months ago) by phornby
Make operator=() on exception non-virtual. Should silence the Altix compiler. However, if an exception is cast to another parent type, and operator=() is called when the exception so cast is an l-value in the assignment, an "incomplete" assignment will occur, copying only the parent class members of the l-value in the assignmnet.
Revision 1646 - Directory Listing
Modified Tue Jul 15 05:27:39 2008 UTC (13 years, 5 months ago) by phornby
Unused vars due to the #if 0's in the code.
Revision 1645 - Directory Listing
Modified Tue Jul 15 05:26:38 2008 UTC (13 years, 5 months ago) by phornby
unused vars.
Revision 1639 - Directory Listing
Modified Mon Jul 14 08:55:25 2008 UTC (13 years, 5 months ago) by gross
Revision 1637 - Directory Listing
Modified Mon Jul 14 05:34:59 2008 UTC (13 years, 5 months ago) by ksteube
Resolved some compiler warnings Changed blocktimer to not use strdup, intead malloc and strcpy
Revision 1634 - Directory Listing
Modified Sat Jul 12 09:08:33 2008 UTC (13 years, 5 months ago) by phornby
linux_gcc_eg_options.py: remove the std99 option, it is no longer needed as the code compiles without C 1999 extension (need for these extensions elinminated in windows port). Turn on all warnings except unknown pragmas. Should catch a lot of stuff. SConstruct: Impassioned plea system_dep.h: Add the standard incantation for dealing with const declarations in C code called from C and C++ blocktimer: Get the calling interface right for C code called from C and C++ and use __const as defined in system_dep.h (Should be re-factored into compiler_dep.h file). MeshAdapterFactory.cpp: Since we have (effectively) no control over netCDF policy, cast const char *'s to char *'s
Revision 1632 - Directory Listing
Modified Sat Jul 12 07:17:50 2008 UTC (13 years, 5 months ago) by trankine
compiling with netcdf on revealed an unused var.
Revision 1628 - Directory Listing
Modified Fri Jul 11 13:12:46 2008 UTC (13 years, 5 months ago) by phornby
Merge in /branches/windows_from_1456_trunk_1620_merged_in branch. You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625. That will be useful for diffing & checking on my stupidity. Here is a list of the conflicts and their resolution at this point in time. ================================================================================= (LLWS == looks like white space). finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong..... finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS paso/src/PCG.c - resolve to branch - unused var fixes. paso/src/SolverFCT.c - resolve to branch - LLWS paso/src/FGMRES.c - resolve to branch - LLWS paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed, but for the sake of saftey..... paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error on bad unimplemented Paso_FunctionCall. paso/src/SolverFCT_solve.c - resolve to branch version, unused vars paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars. escript/src/Utils.cpp - resloved to branch, needs WinSock2.h escript/src/DataExpanded.cpp - resolved to branch version - LLWS escript/src/DataFactory.cpp - resolve to branch version ================================================================================= This currently passes tests on linux (debian), but is not checked on windows or Altix yet. This checkin is to make a trunk I can check out for windows to do tests on it. Known outstanding problem is in the operator=() method of exceptions causing warning messages on the intel compilers. May the God of doughnuts have mercy on my soul.
Revision 1574 - Directory Listing
Modified Mon May 26 13:59:58 2008 UTC (13 years, 6 months ago) by gross
some modifications that may help to speed up compilation
Revision 1573 - Directory Listing
Modified Mon May 26 13:01:31 2008 UTC (13 years, 6 months ago) by gross
some modifications to run less tests
Revision 1572 - Directory Listing
Modified Mon May 26 12:50:56 2008 UTC (13 years, 6 months ago) by gross
some openmp problems in PCG fixed.
Revision 1570 - Directory Listing
Modified Sat May 24 21:31:04 2008 UTC (13 years, 6 months ago) by gross
modifications to PCG to support dynamic scheduling
Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (13 years, 6 months ago) by ksteube
Some testing on ac.apac.edu.au, more work needed New pyvisi example offscreen.py for offscreen rendering
Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (13 years, 6 months ago) by ksteube
scons all_tests passes on Savanna with OMP=1 and OMP=4. New boost for Savanna. A few more cases of #s -> %s.
Revision 1566 - Directory Listing
Modified Thu May 22 12:07:35 2008 UTC (13 years, 6 months ago) by gross
some changes to chunk test
Revision 1565 - Directory Listing
Modified Thu May 22 10:19:47 2008 UTC (13 years, 6 months ago) by gross
some small fixes for openmp
Revision 1564 - Directory Listing
Modified Thu May 22 09:31:33 2008 UTC (13 years, 6 months ago) by gross
some openmp dynamic scheduling for MVM.
Revision 1562 - Directory Listing
Modified Wed May 21 13:04:40 2008 UTC (13 years, 6 months ago) by gross
The algebraic upwinding with MPI. The case of boundary constraint needs still some attention.
Revision 1556 - Directory Listing
Modified Mon May 12 00:54:58 2008 UTC (13 years, 7 months ago) by gross
Modification to allow mixed mode execution. In order to keep the code portable accross platform all MPI calls within parallel regions have been moved.
Revision 1555 - Directory Listing
Modified Mon May 12 00:32:08 2008 UTC (13 years, 7 months ago) by ksteube
Adjusted vantage point
Revision 1553 - Directory Listing
Modified Thu May 8 09:38:07 2008 UTC (13 years, 7 months ago) by gross
some small bugs fixed to get MPI going with the modification. MPI version of BiCGStab added.
Revision 1552 - Directory Listing
Modified Thu May 8 08:52:41 2008 UTC (13 years, 7 months ago) by gross
some changes to make the implementatiopn of a upwind MPI version easier
Revision 1543 - Directory Listing
Modified Wed Apr 30 23:21:27 2008 UTC (13 years, 7 months ago) by ksteube
Create an MPEG movie from the state.N.vtu files of convection.py using pyvisi
Revision 1518 - Directory Listing
Modified Fri Apr 18 05:47:52 2008 UTC (13 years, 8 months ago) by artak
Test are created for MINRES and TFQMR methods
Revision 1516 - Directory Listing
Modified Fri Apr 18 01:02:25 2008 UTC (13 years, 8 months ago) by ksteube
Reduced L and changed Arenious from 22.0 to 0.0
Revision 1515 - Directory Listing
Modified Thu Apr 17 23:36:31 2008 UTC (13 years, 8 months ago) by ksteube
Change to 3-D and change viscosity
Revision 1514 - Directory Listing
Modified Wed Apr 16 00:15:44 2008 UTC (13 years, 8 months ago) by artak
default input parameter iter_restart for GMRES is set to 20
Revision 1513 - Directory Listing
Modified Tue Apr 15 08:47:57 2008 UTC (13 years, 8 months ago) by gross
pragma ivdep removed. icc produced wrong code.
Revision 1512 - Directory Listing
Modified Tue Apr 15 00:54:25 2008 UTC (13 years, 8 months ago) by ksteube
Some typos
Revision 1494 - Directory Listing
Modified Mon Apr 14 06:53:28 2008 UTC (13 years, 8 months ago) by phornby
Make this exactly the same as the run_linearPDEsOnFinley.py.trunk_version on the windows port branch. Makes merge easier later.
Revision 1488 - Directory Listing
Modified Fri Apr 11 00:22:31 2008 UTC (13 years, 8 months ago) by artak
restart parameter is changed in GMRES(m)
Revision 1483 - Directory Listing
Modified Wed Apr 9 03:20:00 2008 UTC (13 years, 8 months ago) by artak
command line input parameters manipulation and execution time calculation are added
Revision 1476 - Directory Listing
Modified Mon Apr 7 23:38:50 2008 UTC (13 years, 8 months ago) by gross
Jacobian-free Newton method added to Paso
Revision 1474 - Directory Listing
Modified Mon Apr 7 01:27:01 2008 UTC (13 years, 8 months ago) by gross
restart is supported now.
Revision 1472 - Directory Listing
Modified Thu Apr 3 09:07:07 2008 UTC (13 years, 8 months ago) by gross
some first steps towards restart added
Revision 1471 - Directory Listing
Modified Thu Apr 3 05:19:06 2008 UTC (13 years, 8 months ago) by gross
test for GMRES solver for Stokes problem added
Revision 1464 - Directory Listing
Modified Tue Apr 1 23:27:09 2008 UTC (13 years, 8 months ago) by gross
bug for interpoltion from reduced solution to elements in MPI fixed.
Revision 1463 - Directory Listing
Modified Tue Apr 1 05:20:57 2008 UTC (13 years, 8 months ago) by gross
a better convection code
Revision 1459 - Directory Listing
Modified Thu Mar 27 01:49:10 2008 UTC (13 years, 8 months ago) by ksteube
Implemented ParMETIS for mesh partition optimization under MPI. Documented optimize=True in User Guide for Brick() and Rectangle().
Revision 1456 - Directory Listing
Modified Thu Feb 28 17:20:49 2008 UTC (13 years, 9 months ago) by phornby
Clean up some debugging files from the branch merge.
Revision 1455 - Directory Listing
Modified Thu Feb 28 17:19:44 2008 UTC (13 years, 9 months ago) by phornby
Merge of branches/windows_from_1431_trunk. Revamp of the exception system. Fix unused vars and signed/unsigned comparisons. defined a macro THROW(ARG) in the system_dep.h's to deal with the expectations of declarations on different architectures. Details in the logs of branches/windows_from_1431_trunk. pre-merge snapshot of the trunk in tags/trunk_at_1452
Revision 1428 - Directory Listing
Modified Wed Feb 27 08:07:11 2008 UTC (13 years, 9 months ago) by trankine
Merge changes from windows port branch to test build on *nix not broken.
Revision 1425 - Directory Listing
Modified Wed Feb 27 06:12:04 2008 UTC (13 years, 9 months ago) by artak
Added new test for BiCGStab in run_simplesolve.py algorithmic change in BICGSTAB: from r=r-wt to r=s-wt
Revision 1417 - Directory Listing
Modified Mon Feb 25 04:45:48 2008 UTC (13 years, 9 months ago) by gross
some more work on the transport solver.
Revision 1414 - Directory Listing
Modified Thu Feb 14 10:01:43 2008 UTC (13 years, 10 months ago) by gross
a first verion of a Stokes solver
Revision 1411 - Directory Listing
Modified Thu Feb 7 08:09:15 2008 UTC (13 years, 10 months ago) by gross
second test for upwinding added
Revision 1410 - Directory Listing
Modified Thu Feb 7 04:24:00 2008 UTC (13 years, 10 months ago) by gross
a new version of the algebric upwinding a. flux limiter
Revision 1407 - Directory Listing
Modified Mon Feb 4 06:45:48 2008 UTC (13 years, 10 months ago) by gross
new upwinding algorithm (still fails)
Revision 1402 - Directory Listing
Modified Thu Jan 31 00:17:49 2008 UTC (13 years, 10 months ago) by ksteube
now implemented to read/fan out elements
Revision 1401 - Directory Listing
Modified Fri Jan 25 04:31:18 2008 UTC (13 years, 10 months ago) by gross
rewrite antidiffusion calculation to avoid coloring for OPENMP parallelization
Revision 1400 - Directory Listing
Modified Thu Jan 24 06:04:31 2008 UTC (13 years, 10 months ago) by gross
better test example for upwinding added
Revision 1393 - Directory Listing
Modified Mon Jan 21 06:21:14 2008 UTC (13 years, 10 months ago) by gross
axissymmetric collaps added.
Revision 1392 - Directory Listing
Modified Mon Jan 21 06:20:54 2008 UTC (13 years, 10 months ago) by gross
axissymmetric collaps added.
Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (13 years, 11 months ago) by trankine
And get the *(&(*&(* name right
Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (13 years, 11 months ago) by trankine
Original Path: temp/finley
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.
Revision 1382 - Directory Listing
Modified Thu Jan 10 00:21:22 2008 UTC (13 years, 11 months ago) by gross
some tests got deactivated. they are back now.
Revision 1378 - Directory Listing
Modified Wed Jan 9 03:53:38 2008 UTC (13 years, 11 months ago) by gross
new reference files considering the change in quadrature schemes
Revision 1377 - Directory Listing
Modified Wed Jan 9 03:45:59 2008 UTC (13 years, 11 months ago) by gross
Some code was moved around to slow down the bustling intel compiler v10.
Revision 1376 - Directory Listing
Modified Wed Jan 9 01:38:18 2008 UTC (13 years, 11 months ago) by gross
inserted sys.exit(1) into the tests so scons can detect the failure of the test. A similar statement has been removed from an earlier as it produces problems on 64bit Linux. Previously exit(0) was called in case of success but now this is not done in order to avoid a fatal end of the program. in the case of an error in the test there could be a fatal error so but I guess that this not really a problem. PS: the fact that signal 0 was returned even for the case of an error lead to the illusion that all tests have been completed successfully.
Revision 1375 - Directory Listing
Modified Wed Jan 9 00:15:05 2008 UTC (13 years, 11 months ago) by gross
bug in interpolation at reduced face elements fixed.
Revision 1374 - Directory Listing
Modified Tue Jan 8 09:37:55 2008 UTC (13 years, 11 months ago) by gross
some changes to get things going on the cognac.ivec.org.
Revision 1371 - Directory Listing
Modified Thu Jan 3 06:11:21 2008 UTC (13 years, 11 months ago) by gross
some bugs in the updwing scheme but there are still problem with the cross wind direction.
Revision 1370 - Directory Listing
Modified Wed Jan 2 09:21:43 2008 UTC (13 years, 11 months ago) by gross
explicit upwinding scheme added.
Revision 1368 - Directory Listing
Modified Wed Dec 19 03:45:20 2007 UTC (13 years, 11 months ago) by gross
very first step towards a pythn wrapper for the transport problem.
Revision 1367 - Directory Listing
Modified Wed Dec 19 02:45:07 2007 UTC (13 years, 11 months ago) by gross
finley can now assemble a transport problem.
Revision 1366 - Directory Listing
Modified Tue Dec 18 05:49:17 2007 UTC (14 years ago) by gross
finley can create a TransportProblem now
Revision 1365 - Directory Listing
Modified Mon Dec 17 07:28:23 2007 UTC (14 years ago) by gross
some cosmetics.
Revision 1364 - Directory Listing
Modified Mon Dec 17 07:22:45 2007 UTC (14 years ago) by gross
finley interface to paso's transport solver added.
Revision 1361 - Directory Listing
Modified Fri Dec 14 09:26:51 2007 UTC (14 years ago) by gross
first steps towards a flux controlled transport solver.
Revision 1360 - Directory Listing
Modified Thu Dec 13 05:05:00 2007 UTC (14 years ago) by ksteube
Partial implementation of ReadMeshMPI. Will eventually replace ReadMesh but for now has a different name.
Revision 1359 - Directory Listing
Modified Wed Dec 5 03:42:09 2007 UTC (14 years ago) by gross
debug print removed.
Revision 1358 - Directory Listing
Modified Wed Dec 5 03:41:06 2007 UTC (14 years ago) by gross
setTaggedValue works now for expanded data.
Revision 1353 - Directory Listing
Modified Thu Nov 22 06:05:35 2007 UTC (14 years ago) by matt
Reversed the removal of blocktimer code. This needs to be fixed properly for the Windows stuff to work.
Revision 1352 - Directory Listing
Modified Thu Nov 22 03:43:28 2007 UTC (14 years ago) by matt
Removed blocktimer code from Finley_Assemble_PDE().
Revision 1347 - Directory Listing
Modified Fri Nov 16 05:37:07 2007 UTC (14 years, 1 month ago) by ksteube
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and implementing MPI parallelism. Now allocating ElementFile for ContactElements even if there are none. Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.
Revision 1346 - Directory Listing
Modified Wed Nov 14 22:48:12 2007 UTC (14 years, 1 month ago) by ksteube
dump/LoadMesh methods work except for TagMap, Point elements probably OK but are untested.
Revision 1345 - Directory Listing
Modified Wed Nov 14 07:53:34 2007 UTC (14 years, 1 month ago) by ksteube
Created LoadMesh to read a mesh from a distributed NetCDF file. Can read nodes but not elements yet.
Revision 1344 - Directory Listing
Modified Wed Nov 14 04:28:25 2007 UTC (14 years, 1 month ago) by ksteube
Now using TMPMEMFREE but still thrashes memory for very large mesh. Future solution will be to use NetCDF subsetting and less temp memory.
Revision 1343 - Directory Listing
Modified Wed Nov 14 02:48:02 2007 UTC (14 years, 1 month ago) by ksteube
First cut implementation of mesh.dump() using NetCDF. TagMap not saved yet. The code for Points probably works but has not been tested.
Revision 1342 - Directory Listing
Modified Thu Nov 8 23:56:58 2007 UTC (14 years, 1 month ago) by gross
improvements on integration schemes for tets and tris: double precision (not all), higher orders
Revision 1341 - Directory Listing
Modified Thu Nov 8 23:55:20 2007 UTC (14 years, 1 month ago) by gross
tests for numerical integration added.
Revision 1340 - Directory Listing
Modified Thu Nov 8 06:24:43 2007 UTC (14 years, 1 month ago) by ksteube
Fixed create a local labeling of the DOFs
Revision 1339 - Directory Listing
Modified Wed Nov 7 01:53:12 2007 UTC (14 years, 1 month ago) by ksteube
Modified scons target release_src to include lib/ and include/ since their presence is required for a build. Modified mydomain.print_mesh_info(True) to include more useful info about a distributed domain. Added mypde.getOperator().print_matrix_info(True) to tell about a distributed matrix.
Revision 1338 - Directory Listing
Modified Mon Nov 5 06:32:29 2007 UTC (14 years, 1 month ago) by gross
bug in the selection of the order of the output mesh fixed.
Revision 1335 - Directory Listing
Modified Fri Nov 2 05:54:25 2007 UTC (14 years, 1 month ago) by gross
color ranges were not initialized.
Revision 1326 - Directory Listing
Modified Mon Oct 1 08:10:41 2007 UTC (14 years, 2 months ago) by ksteube
Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes. Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.
Revision 1322 - Directory Listing
Modified Thu Sep 27 04:40:43 2007 UTC (14 years, 2 months ago) by ksteube
Code now compiles and runs on cyclone.hpcu.uq.edu.au. Had to remove intelc from the SConstruct, but didn't commit that change. Changed a couple C++ comments to C comments.
Revision 1317 - Directory Listing
Modified Tue Sep 25 03:41:48 2007 UTC (14 years, 2 months ago) by ksteube
yet another file copied from MPI branch to trunk
Revision 1315 - Directory Listing
Modified Tue Sep 25 02:41:13 2007 UTC (14 years, 2 months ago) by ksteube
Copied more files from MPI branch to trunk
Revision 1313 - Directory Listing
Modified Tue Sep 25 01:44:26 2007 UTC (14 years, 2 months ago) by ksteube
Copied a handful of files from trunk-mpi-branch into trunk
Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (14 years, 2 months ago) by ksteube
The MPI branch is hereby closed. All future work should be in trunk. Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch. In this revision I copied all files from trunk-mpi-branch over the corresponding trunk files. I did not use 'svn merge', it was a copy.
Revision 1310 - Directory Listing
Modified Mon Sep 24 04:00:47 2007 UTC (14 years, 2 months ago) by ksteube
A few additions to make trunk match trunk-mpi-branch
Revision 1235 - Directory Listing
Modified Mon Aug 13 00:25:29 2007 UTC (14 years, 4 months ago) by phornby
Started the removal of IS_WINDOWS_PLATFORM, and now insis that the windows options file be kept up to date, and be complete. boost_libs -> boost_lib.
Revision 1221 - Directory Listing
Modified Fri Aug 3 00:27:20 2007 UTC (14 years, 4 months ago) by ksteube
Disabled HRZ lumping until the tests pass
Revision 1220 - Directory Listing
Modified Thu Aug 2 04:46:20 2007 UTC (14 years, 4 months ago) by btully
Included HRZ lumping scheme for the LUMPED solver.
Revision 1204 - Directory Listing
Modified Sat Jun 23 11:43:12 2007 UTC (14 years, 5 months ago) by gross
a frame for an improved lumping procedure added.
Revision 1198 - Directory Listing
Modified Tue Jun 19 00:24:29 2007 UTC (14 years, 6 months ago) by btully
Updated Rec9 Shape Functions. Included a new definition for Hex27 Reference Element and associated Shape Functions.
Revision 1185 - Directory Listing
Modified Thu May 31 04:33:31 2007 UTC (14 years, 6 months ago) by gross
once again: some changes to get the tests passed on windows.
Revision 1181 - Directory Listing
Modified Wed May 30 06:08:44 2007 UTC (14 years, 6 months ago) by gross
some more test for vtk interface
Revision 1180 - Directory Listing
Modified Wed May 30 05:53:38 2007 UTC (14 years, 6 months ago) by gross
some new test data
Revision 1179 - Directory Listing
Modified Wed May 30 05:10:02 2007 UTC (14 years, 6 months ago) by gross
some debug print outs removed.
Revision 1178 - Directory Listing
Modified Wed May 30 05:03:17 2007 UTC (14 years, 6 months ago) by gross
bug in visualization interface test fixed.
Revision 1177 - Directory Listing
Modified Wed May 30 05:01:29 2007 UTC (14 years, 6 months ago) by gross
debug print out removed.
Revision 1174 - Directory Listing
Modified Tue May 29 07:05:59 2007 UTC (14 years, 6 months ago) by gross
more modifications to the test rquired by the new intergartion schemes
Revision 1171 - Directory Listing
Modified Fri May 25 06:55:05 2007 UTC (14 years, 6 months ago) by gross
some modifications to the tests to consider the new integration schemes for tri and tet
Revision 1170 - Directory Listing
Modified Fri May 25 05:24:57 2007 UTC (14 years, 6 months ago) by btully
Added new methods for integration of Tri's and Tet's For Order 2 and 3. NB: There is a conflict in the testing of the getNormal() function. On consultation with Lutz, we have concluded this is an issue with the test rather than the new methods.
Revision 1163 - Directory Listing
Modified Wed May 23 23:56:39 2007 UTC (14 years, 6 months ago) by gross
import of DISPLAY environment variable into scons ENV added. This is required to run pyvisi tests under XGL
Revision 1157 - Directory Listing
Modified Mon May 21 06:45:52 2007 UTC (14 years, 6 months ago) by gross
ops, wrong name
Revision 1156 - Directory Listing
Modified Mon May 21 06:45:14 2007 UTC (14 years, 6 months ago) by gross
node label optimization
Revision 1149 - Directory Listing
Modified Thu May 17 00:30:15 2007 UTC (14 years, 7 months ago) by gross
some fixes from the windows version
Revision 1141 - Directory Listing
Modified Tue May 15 04:24:51 2007 UTC (14 years, 7 months ago) by gross
Some changes to make things run on windows. There is still a problem with netcdf an long file names on windows but there is the suspicion that this is a bigger problem related to boost (compiler options). In fact runs with large numbers of iteration/time steps tend to create seg faults.
Revision 1139 - Directory Listing
Modified Mon May 14 05:12:53 2007 UTC (14 years, 7 months ago) by ksteube
Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.
Revision 1137 - Directory Listing
Modified Thu May 10 08:11:31 2007 UTC (14 years, 7 months ago) by gross
This version passes the tests on windows except for * vtk * netCDF The version needs to be tested on altix and linux
Revision 1135 - Directory Listing
Modified Wed May 9 01:58:32 2007 UTC (14 years, 7 months ago) by gross
These are still modifications for windows. The run_generators.py and run_visualization_interface.py pass now. There is no need for the win32 reference directory.
Revision 1134 - Directory Listing
Modified Wed May 9 01:44:04 2007 UTC (14 years, 7 months ago) by gross
fixed a bag in the extra bits to make the ordering unique. This does not effect the correctness of the result but makes sure that the results are independent from the sorting algorithm.
Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (14 years, 7 months ago) by gross
Changes needed for windows. This still does not work on and has not run on linux and the altix. There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf.
Revision 1116 - Directory Listing
Modified Mon Apr 23 03:36:34 2007 UTC (14 years, 7 months ago) by gross
Interporpolation from full to reduced integration order added.
Revision 1107 - Directory Listing
Modified Thu Apr 19 02:14:18 2007 UTC (14 years, 8 months ago) by gross
Small bug in ReadMeh call fixed. Test for typ of verbose argument in pdetools.SaddlePointSolver added.
Revision 1092 - Directory Listing
Modified Fri Apr 13 03:39:49 2007 UTC (14 years, 8 months ago) by gross
the useless profilinf for data.cpp removed (doDebug=yes should work again) and a small bug in the gmsh reader fixed.
Revision 1080 - Directory Listing
Modified Wed Apr 11 06:07:30 2007 UTC (14 years, 8 months ago) by gross
small typo fixed.
Revision 1072 - Directory Listing
Modified Thu Mar 29 06:44:30 2007 UTC (14 years, 8 months ago) by gross
PDE assemblage for reduced integration order + tests added.
Revision 1065 - Directory Listing
Modified Tue Mar 27 09:04:56 2007 UTC (14 years, 8 months ago) by gross
tests VTK + DX files for reduced integration order added. Tests pass.
Revision 1064 - Directory Listing
Modified Tue Mar 27 06:21:02 2007 UTC (14 years, 8 months ago) by gross
test for reduced integration order for grad, interpolate and integrate added. Bug shown by the tests have been fixed.
Revision 1063 - Directory Listing
Modified Mon Mar 26 08:29:18 2007 UTC (14 years, 8 months ago) by gross
test for creation of reduced function spaces added. tests for dumping data on reduced function spaces added. This showed a small bug with compilation setting for compilation with netCDF which is fixed
Revision 1062 - Directory Listing
Modified Mon Mar 26 06:17:53 2007 UTC (14 years, 8 months ago) by gross
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.
Revision 1059 - Directory Listing
Modified Fri Mar 23 11:01:53 2007 UTC (14 years, 8 months ago) by gross
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.
Revision 1049 - Directory Listing
Modified Tue Mar 20 03:00:18 2007 UTC (14 years, 8 months ago) by gross
bandwidth optimizer has been moved back (Lutz: switch on your brain. )
Revision 1048 - Directory Listing
Modified Tue Mar 20 02:59:14 2007 UTC (14 years, 8 months ago) by gross
bandwidth optimizer has been moved.
Revision 1047 - Directory Listing
Modified Tue Mar 20 02:54:09 2007 UTC (14 years, 8 months ago) by gross
some clean-up
Revision 1046 - Directory Listing
Modified Tue Mar 20 02:52:24 2007 UTC (14 years, 8 months ago) by gross
the finley benchmarks have been moved into a seperate directory to get keep them out off the building process.
Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (14 years, 9 months ago) by gross
clear name tagging is supported now.
Revision 1030 - Directory Listing
Modified Wed Mar 14 05:14:44 2007 UTC (14 years, 9 months ago) by phornby
Assemble_CopyElementData.c - resolve with my local edits. Mesh_saveVTK.c - remove debug print. DataArrayView.h - remove dllim/export declarations on template functions.
Revision 1028 - Directory Listing
Modified Wed Mar 14 00:15:24 2007 UTC (14 years, 9 months ago) by gross
modifications to be compliant with _WIN32. The substitutes for asinh, acosh, atanh are still missing (erf will through an exception)
Revision 1022 - Directory Listing
Modified Tue Mar 13 02:25:53 2007 UTC (14 years, 9 months ago) by phornby
Now define the destructors for all the Exceptions (sorry guys & gals).
Revision 1020 - Directory Listing
Modified Mon Mar 12 10:12:36 2007 UTC (14 years, 9 months ago) by phornby
Added explicit destructors to all Exception classes. Fixed an ifdef in TestCase.cpp Made the conditional definition of M_PI in LocalOps.h depend only on M_PI being undefined. Replace dynamically dimensioned arrays in DataFactory & DataTagged with malloc. sort() method of list does not take a named argument (despite the manual's claims to the contary).
Revision 1003 - Directory Listing
Modified Thu Mar 1 01:53:37 2007 UTC (14 years, 9 months ago) by gross
small fix on the finley gmsh reader for the case of no face elements.
Revision 997 - Directory Listing
Modified Mon Feb 26 06:31:45 2007 UTC (14 years, 9 months ago) by gross
small small fixes in modellib
Revision 990 - Directory Listing
Modified Wed Feb 21 04:27:52 2007 UTC (14 years, 9 months ago) by ksteube
Cleaned up the python in-line doc to make epydoc work better Configured for shake71 to find NetCDF libraries
Revision 983 - Directory Listing
Modified Tue Feb 20 02:49:08 2007 UTC (14 years, 9 months ago) by gross
full Data object dump and load now available. Tests added.
Revision 982 - Directory Listing
Modified Mon Feb 19 23:55:52 2007 UTC (14 years, 9 months ago) by gross
data object load checks for sample ordering now.
Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (14 years, 10 months ago) by ksteube
Had to undo commit to new MPI branch. The changes went into the original and not the branch. The files committed here are exactly the same as revision 969.
Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (14 years, 10 months ago) by ksteube
Parallelization using MPI for solution of implicit problems. Parallelization for explicit problems has already been accomplished in the main SVN branch. This is incomplete and is not ready for use.
Revision 967 - Directory Listing
Modified Tue Feb 13 09:40:12 2007 UTC (14 years, 10 months ago) by gross
dump and load of expanded data via netCDF added. some test are still missing.
Revision 965 - Directory Listing
Modified Tue Feb 13 05:38:45 2007 UTC (14 years, 10 months ago) by gross
johns local setting removed.
Revision 964 - Directory Listing
Modified Tue Feb 13 05:10:26 2007 UTC (14 years, 10 months ago) by gross
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI). Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will profit form this at this stage but it will allow a faster dump of data objects.
Revision 960 - Directory Listing
Modified Tue Feb 13 01:39:05 2007 UTC (14 years, 10 months ago) by gross
typo in file name fixed
Revision 959 - Directory Listing
Modified Tue Feb 13 01:38:39 2007 UTC (14 years, 10 months ago) by gross
typo in file name fixed
Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (14 years, 10 months ago) by gross
escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/. Currently only constant data are implemented with expanded and tagged data to follow. There are two new functions to dump a data object s=Data(...) s.dump(<filename>) and to recover it s=load(<filename>, domain) Notice that the function space of s is recovered but domain is still need. dump and load will replace archive and extract. The installation needs now the netCDF installed.
Revision 944 - Directory Listing
Modified Tue Jan 30 08:57:37 2007 UTC (14 years, 10 months ago) by gross
PropertySet added
Revision 940 - Directory Listing
Modified Mon Jan 29 00:09:08 2007 UTC (14 years, 10 months ago) by gross
ivdep removed as it produces wrong results with OPenMP
Revision 939 - Directory Listing
Modified Thu Jan 25 04:23:38 2007 UTC (14 years, 10 months ago) by gross
bug in finley mesh reader fixed
Revision 935 - Directory Listing
Modified Tue Jan 23 09:53:10 2007 UTC (14 years, 10 months ago) by gross
a missing file
Revision 934 - Directory Listing
Modified Tue Jan 23 09:52:45 2007 UTC (14 years, 10 months ago) by gross
gmsh file reader for finley
Revision 929 - Directory Listing
Modified Wed Jan 17 07:41:13 2007 UTC (14 years, 11 months ago) by gross
reverse orientation added but does not work for 2D yet.
Revision 903 - Directory Listing
Modified Fri Nov 17 01:59:49 2006 UTC (15 years, 1 month ago) by gross
bug with tagged data in vtk and dx writer fixed
Revision 897 - Directory Listing
Modified Thu Nov 9 07:37:40 2006 UTC (15 years, 1 month ago) by gross
cfs added
Revision 896 - Directory Listing
Modified Thu Nov 9 05:46:31 2006 UTC (15 years, 1 month ago) by gross
a new version
Revision 895 - Directory Listing
Modified Thu Nov 9 05:45:55 2006 UTC (15 years, 1 month ago) by gross
moved to make plave for better version
Revision 894 - Directory Listing
Modified Thu Nov 9 05:45:22 2006 UTC (15 years, 1 month ago) by gross
Revision 893 - Directory Listing
Modified Wed Nov 8 08:20:19 2006 UTC (15 years, 1 month ago) by gross
small bug fixed
Revision 892 - Directory Listing
Modified Wed Nov 8 06:14:29 2006 UTC (15 years, 1 month ago) by gross
Revision 888 - Directory Listing
Modified Tue Nov 7 08:31:26 2006 UTC (15 years, 1 month ago) by gross
Problem in Mesh_findMatchingFaces.c fixed: default tolerance in python interface was set too tight.
Revision 887 - Directory Listing
Modified Thu Nov 2 07:17:07 2006 UTC (15 years, 1 month ago) by gross
some more work on the slip distribution
Revision 884 - Directory Listing
Modified Mon Oct 30 06:37:30 2006 UTC (15 years, 1 month ago) by gross
simple mesh generator for slip_stress
Revision 883 - Directory Listing
Modified Mon Oct 30 06:12:54 2006 UTC (15 years, 1 month ago) by gross
new example added
Revision 878 - Directory Listing
Modified Wed Oct 25 03:42:56 2006 UTC (15 years, 1 month ago) by gross
bigger mesh
Revision 877 - Directory Listing
Modified Wed Oct 25 03:06:58 2006 UTC (15 years, 1 month ago) by gross
backtraking in the saddlepoint problem (not perfect yet)
Revision 873 - Directory Listing
Modified Mon Oct 16 04:07:33 2006 UTC (15 years, 2 months ago) by gross
uszawa scheme runs with variable viscosity
Revision 868 - Directory Listing
Modified Tue Oct 10 22:32:13 2006 UTC (15 years, 2 months ago) by gross
new benchmark problem
Revision 866 - Directory Listing
Modified Mon Oct 9 03:50:20 2006 UTC (15 years, 2 months ago) by gross
now GEAR scheme is used
Revision 865 - Directory Listing
Modified Fri Oct 6 10:02:18 2006 UTC (15 years, 2 months ago) by gross
some functions for minimizing a function added. there is still some work required but successfully applied in an aplication
Revision 862 - Directory Listing
Modified Tue Oct 3 06:01:30 2006 UTC (15 years, 2 months ago) by gross
bug in mesh generator fixed.
Revision 859 - Directory Listing
Modified Tue Sep 26 02:19:18 2006 UTC (15 years, 2 months ago) by gross
tests for order2 tetrahedron elements added
Revision 858 - Directory Listing
Modified Tue Sep 26 01:01:39 2006 UTC (15 years, 2 months ago) by gross
typo fixed
Revision 857 - Directory Listing
Modified Tue Sep 26 01:00:45 2006 UTC (15 years, 2 months ago) by gross
tests for order1 tetrahedron elements added
Revision 855 - Directory Listing
Modified Fri Sep 22 09:30:06 2006 UTC (15 years, 2 months ago) by gross
some tests for triangle meshes added
Revision 853 - Directory Listing
Modified Wed Sep 20 05:56:36 2006 UTC (15 years, 2 months ago) by gross
some performance problems wit openmp fixed.
Revision 850 - Directory Listing
Modified Sun Sep 17 23:27:00 2006 UTC (15 years, 3 months ago) by gross
some problems with vtk writer fixed
Revision 844 - Directory Listing
Modified Thu Sep 7 08:32:01 2006 UTC (15 years, 3 months ago) by gross
with better mesh
Revision 843 - Directory Listing
Modified Thu Sep 7 05:55:12 2006 UTC (15 years, 3 months ago) by gross
some timing added
Revision 842 - Directory Listing
Modified Thu Sep 7 05:40:22 2006 UTC (15 years, 3 months ago) by gross
a little wave propagation simulation
Revision 820 - Directory Listing
Modified Mon Aug 28 06:55:36 2006 UTC (15 years, 3 months ago) by gross
make the modelframe test run
Revision 818 - Directory Listing
Modified Sun Aug 27 11:10:34 2006 UTC (15 years, 3 months ago) by dhawcroft
saveVTK fixes
Revision 817 - Directory Listing
Modified Sat Aug 26 03:08:52 2006 UTC (15 years, 3 months ago) by ksteube
Can now compile and run with MPI on shake71
Revision 815 - Directory Listing
Modified Wed Aug 23 09:31:50 2006 UTC (15 years, 3 months ago) by gross
ops! wrong file has been sent
Revision 814 - Directory Listing
Modified Wed Aug 23 09:31:10 2006 UTC (15 years, 3 months ago) by gross
small bug in general tensor propduct fixed
Revision 812 - Directory Listing
Modified Thu Aug 17 05:49:59 2006 UTC (15 years, 4 months ago) by dhawcroft
Revision 808 - Directory Listing
Modified Fri Aug 11 01:25:16 2006 UTC (15 years, 4 months ago) by ksteube
Can now build escript and use doxygen on shake71
Revision 806 - Directory Listing
Modified Thu Aug 10 11:58:52 2006 UTC (15 years, 4 months ago) by gross
Interface to the direct solver library UMLPACK is no implemented.
Revision 799 - Directory Listing
Modified Mon Aug 7 23:30:53 2006 UTC (15 years, 4 months ago) by ksteube
Moved a #pragma to modify the appropriate line
Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (15 years, 4 months ago) by gross
Reimplementation of the assemblage with persistent jacobeans. There are also a few changes to the tests which has now dramatically reduced the memory demand.
Revision 796 - Directory Listing
Modified Mon Jul 31 06:16:17 2006 UTC (15 years, 4 months ago) by dhawcroft
much faster parallel saveVTK needs testers, don't be shy
Revision 794 - Directory Listing
Modified Sun Jul 30 03:45:01 2006 UTC (15 years, 4 months ago) by dhawcroft
Revision 793 - Directory Listing
Modified Sat Jul 29 19:40:22 2006 UTC (15 years, 4 months ago) by dhawcroft
Preliminary MPI version of saveVTK. Needs testers. Works for point data and should work for cell centered data.
Revision 788 - Directory Listing
Modified Wed Jul 26 05:12:15 2006 UTC (15 years, 4 months ago) by bcumming
small corrections to code in previous commit, and some header files that should have been included in the last commit.
Revision 787 - Directory Listing
Modified Wed Jul 26 01:46:45 2006 UTC (15 years, 4 months ago) by bcumming
MPI update Each element (normal elements, faceElements, ContactElements and points) are now assigned a unique global id to streamline per-element calculations and file IO of element data.
Revision 783 - Directory Listing
Modified Tue Jul 18 01:32:50 2006 UTC (15 years, 5 months ago) by gross
coordinates, element size and normals returned by corresponding FunctionSpace mesthods are now protected against updates. So +=, -=, *=, /=, setTaggedValue, fillFromNumArray will through an excpetion. The FunctionSpace class does nut buffer the oordinates, element size and normals yet.
Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (15 years, 5 months ago) by bcumming
Large number of changes to Finley for meshing in MPI. - optimisation and neatening up of rectcanglular mesh generation code - first and second order 1D, 2D and 3D rectangular meshes are now available in finley and escript using MPI. - reduced meshes now generated in MPI, and interpolation to and from reduced data types now supported.
Revision 781 - Directory Listing
Modified Fri Jul 14 08:47:38 2006 UTC (15 years, 5 months ago) by gross
grad functions linked into the persistent jacobean scheme
Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (15 years, 5 months ago) by woo409
+ Updated compilation options for Cognac to squeeze out a bit more performance + Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows
Revision 778 - Directory Listing
Modified Thu Jul 13 02:27:45 2006 UTC (15 years, 5 months ago) by gross
add a switch to stop calls of external solver libraries
Revision 777 - Directory Listing
Modified Wed Jul 12 08:54:45 2006 UTC (15 years, 5 months ago) by gross
integration with persistent jacobeans is running now
Revision 776 - Directory Listing
Modified Wed Jul 12 00:07:31 2006 UTC (15 years, 5 months ago) by gross
basic code for persistence of jacobeans added. routines are not called yet
Revision 773 - Directory Listing
Modified Fri Jul 7 10:10:00 2006 UTC (15 years, 5 months ago) by gross
assemblage tests added
Revision 769 - Directory Listing
Modified Sun Jul 2 23:58:22 2006 UTC (15 years, 5 months ago) by gross
A bit more tests are generated now. Ther is still a problem with the slection of the solution order.
Revision 768 - Directory Listing
Modified Fri Jun 30 09:26:16 2006 UTC (15 years, 5 months ago) by gross
and the generation of tests for contact elements works now.
Revision 767 - Directory Listing
Modified Fri Jun 30 07:29:08 2006 UTC (15 years, 5 months ago) by gross
new FunctionSpace method setTags added
Revision 766 - Directory Listing
Modified Fri Jun 30 06:44:14 2006 UTC (15 years, 5 months ago) by gross
modified version of a test generator (private use)
Revision 765 - Directory Listing
Modified Fri Jun 30 06:37:11 2006 UTC (15 years, 5 months ago) by gross
The test for the contact normal has been modified to take in cosideration the fact that the normal is unique up to the factor +/-1. Now the test checks the kllength of the normal for 1 and the angle to the reference normal.
Revision 763 - Directory Listing
Modified Fri Jun 30 05:52:31 2006 UTC (15 years, 5 months ago) by gross
some modification in the element reordering which should solve some problems caused by the fact that qsort may handels == items differently on different platform.
Revision 759 - Directory Listing
Modified Thu Jun 29 01:53:23 2006 UTC (15 years, 5 months ago) by bcumming
- added directory pythonMPI to the source tree. this directory contains the c++ wrapper that is used to run python scripts in parallel for the MPI version of escript/finley - updated the SConstruct and ./scons/ess_options.py for conditional MPI compilation. To compile the MPI version on ESS uncomment the #define PASO_MPI in ./paso/src/Paso.h and add the command line option useMPI=yes when running scons. - fixed a compile time error in the MPI build in finley/src/CPPAdapter/MeshAdapterFactory.cpp
Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (15 years, 5 months ago) by woo409
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)
Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (15 years, 5 months ago) by bcumming
Changes relating to the MPI version of escript The standard OpenMP version of escript is unchanged - updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes over multiple MPI processes. - added CommBuffer code in Paso for communication of Data associated with distributed meshes - updates in Finley and Escript to support distributed data and operations on distributed data (such as interpolation). - construction of RHS in MPI, so that simple explicit schemes (such as /docs/examples/wave.py without IO and the Locator) can run in MPI. - updated mesh generation for first order line, rectangle and brick meshes and second order line meshes in MPI. - small changes to trunk/SConstruct and trunk/scons/ess_options.py to build the MPI version, these changes are turned off by default.
Revision 731 - Directory Listing
Modified Mon May 15 04:09:52 2006 UTC (15 years, 7 months ago) by bcumming
Revision 730 - Directory Listing
Modified Mon May 15 04:03:49 2006 UTC (15 years, 7 months ago) by bcumming
Revision 727 - Directory Listing
Modified Fri May 12 06:31:06 2006 UTC (15 years, 7 months ago) by gross
In case of an error in paso a seg fault occured. this was caused by inproper deallocation of memory in this case. this problem is fixed now.
Revision 720 - Directory Listing
Modified Thu Apr 27 10:16:05 2006 UTC (15 years, 7 months ago) by gross
formatting errors in epydoc tags fixed
Revision 714 - Directory Listing
Modified Thu Apr 27 05:42:33 2006 UTC (15 years, 7 months ago) by elspeth
Fixed python test
Revision 709 - Directory Listing
Modified Wed Apr 26 06:35:36 2006 UTC (15 years, 7 months ago) by gross
fixes to get scons py_tests going: mainly fixes in the pathes
Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (15 years, 8 months ago) by gross
latex build documentation is working now
Revision 706 - Directory Listing
Modified Sat Apr 8 16:13:02 2006 UTC (15 years, 8 months ago) by gross
python tests compile and run but there is still a problem with dependencies'
Revision 705 - Directory Listing
Modified Fri Apr 7 17:57:37 2006 UTC (15 years, 8 months ago) by gross
python tests are allmost working
Revision 703 - Directory Listing
Modified Thu Apr 6 02:20:47 2006 UTC (15 years, 8 months ago) by gross
some missing files
Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (15 years, 8 months ago) by gross
A few changes in the build mechanism and the file structure so scons can build release tar files: * paso/src/Solver has been moved to paso/src * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by scons py_tests and are part of the release test set * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory (rather then the PYTHONPATH). * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i by not run automatically. * CppUnitTest is now treated as a escript module (against previous decisions). * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files) the python tests don't pass yet due to path problems.
Revision 699 - Directory Listing
Modified Fri Mar 31 06:27:56 2006 UTC (15 years, 8 months ago) by gross
now float**Data is running
Revision 698 - Directory Listing
Modified Fri Mar 31 04:52:55 2006 UTC (15 years, 8 months ago) by gross
test with tagged data pass now
Revision 692 - Directory Listing
Modified Thu Mar 30 08:05:02 2006 UTC (15 years, 8 months ago) by gross
test with tagged data still fail and switched off
Revision 690 - Directory Listing
Modified Tue Mar 28 07:18:51 2006 UTC (15 years, 8 months ago) by robwdcock
+ Added basic_py_tests target which will run the basic set of python tests. The list of python tests was taken from autoscons
Revision 687 - Directory Listing
Modified Mon Mar 27 22:17:32 2006 UTC (15 years, 8 months ago) by gross
small fixes
Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (15 years, 8 months ago) by robwdcock
+ NEW BUILD SYSTEM This commit contains the new build system with cross-platform support. Most things work are before though you can have more control. ENVIRONMENT settings have changed: + You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the esysroot for building and testing performed via scons + ACcESS altix users: It is recommended you change your modules to load the latest intel compiler and other libraries required by boost to match the setup in svn (you can override). The correct modules are as follows module load intel_cc.9.0.026 export MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6 module load boost/1.33.0/python-2.4.1 module load python/2.4.1 module load numarray/1.3.3 Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (15 years, 8 months ago) by elspeth
More copyright info added.
Revision 637 - Directory Listing
Modified Thu Mar 23 10:55:31 2006 UTC (15 years, 8 months ago) by gross
more copyright statements added
Revision 626 - Directory Listing
Modified Thu Mar 23 02:16:36 2006 UTC (15 years, 8 months ago) by elspeth
Copyright information inserted
Revision 620 - Directory Listing
Modified Wed Mar 22 07:43:42 2006 UTC (15 years, 8 months ago) by gross
problem with tagged data isolated
Revision 618 - Directory Listing
Modified Wed Mar 22 04:02:38 2006 UTC (15 years, 8 months ago) by gross
mmio moced to paso
Revision 617 - Directory Listing
Modified Wed Mar 22 02:58:17 2006 UTC (15 years, 8 months ago) by elspeth
More copyright.
Revision 616 - Directory Listing
Modified Wed Mar 22 02:46:56 2006 UTC (15 years, 8 months ago) by elspeth
Copyright added to more source files.
Revision 602 - Directory Listing
Modified Fri Mar 17 06:57:46 2006 UTC (15 years, 9 months ago) by gross
more work on pyvisi integration
Revision 595 - Directory Listing
Modified Tue Mar 14 23:52:45 2006 UTC (15 years, 9 months ago) by gross
test_utilOnFinley fixed (did run the tests that still fail)
Revision 590 - Directory Listing
Modified Fri Mar 10 06:29:14 2006 UTC (15 years, 9 months ago) by gross
all tests activated
Revision 589 - Directory Listing
Modified Fri Mar 10 06:28:35 2006 UTC (15 years, 9 months ago) by gross
my little test generator
Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (15 years, 9 months ago) by gross
eigenvalues: compiles and passes tests on altix now
Revision 580 - Directory Listing
Modified Wed Mar 8 05:45:51 2006 UTC (15 years, 9 months ago) by gross
faster version of the local eigenvalue calculation
Revision 558 - Directory Listing
Modified Thu Feb 23 01:02:31 2006 UTC (15 years, 9 months ago) by gross
switch back to test on no tagged data
Revision 553 - Directory Listing
Modified Wed Feb 22 04:01:21 2006 UTC (15 years, 9 months ago) by gross
tests for tagged data
Revision 552 - Directory Listing
Modified Wed Feb 22 03:18:07 2006 UTC (15 years, 9 months ago) by gross
and more work on saving the element jacobians (please don;t look at the code)
Revision 550 - Directory Listing
Modified Wed Feb 22 02:14:38 2006 UTC (15 years, 9 months ago) by gross
more tests on slicing
Revision 547 - Directory Listing
Modified Tue Feb 21 06:10:54 2006 UTC (15 years, 9 months ago) by gross
solution and reduced solution can have reference numbers now!
Revision 532 - Directory Listing
Modified Wed Feb 15 09:45:53 2006 UTC (15 years, 10 months ago) by gross
first steps towards the reuse of the element jacobians
Revision 526 - Directory Listing
Modified Tue Feb 14 06:56:33 2006 UTC (15 years, 10 months ago) by gross
pdetools test added
Revision 521 - Directory Listing
Modified Tue Feb 14 05:50:56 2006 UTC (15 years, 10 months ago) by gross
now done test_utilOnFinley.py
Revision 491 - Directory Listing
Modified Thu Feb 2 08:21:10 2006 UTC (15 years, 10 months ago) by gross
small bug fixed
Revision 484 - Directory Listing
Modified Thu Feb 2 02:12:08 2006 UTC (15 years, 10 months ago) by jgs
add remainder of includes to SConscript includes install
Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (15 years, 10 months ago) by jgs
add mechanism to install .h files to inc directories (still need to specify full lists of .h files to install)
Revision 480 - Directory Listing
Modified Wed Feb 1 05:15:12 2006 UTC (15 years, 10 months ago) by jgs
rationalise #includes and forward declarations
Revision 479 - Directory Listing
Modified Wed Feb 1 04:36:53 2006 UTC (15 years, 10 months ago) by gross
a few more benchmarks added
Revision 474 - Directory Listing
Modified Mon Jan 30 04:23:44 2006 UTC (15 years, 10 months ago) by jgs
restructure escript source tree move src/Data/* -> src remove inc modify #includes and cpppath settings accordingly
Revision 473 - Directory Listing
Modified Fri Jan 27 01:59:09 2006 UTC (15 years, 10 months ago) by jgs
make adjustments to allow for new source tree structure
Revision 472 - Directory Listing
Modified Fri Jan 27 01:50:59 2006 UTC (15 years, 10 months ago) by jgs
rationalise all #includes
Revision 471 - Directory Listing
Modified Fri Jan 27 01:33:02 2006 UTC (15 years, 10 months ago) by jgs
reorganise finley src tree to remove inc dir and src/finley directory
Revision 468 - Directory Listing
Modified Wed Jan 25 06:50:39 2006 UTC (15 years, 10 months ago) by jgs
reorganised esysUtils to remove inc directory
Revision 467 - Directory Listing
Modified Wed Jan 25 05:43:46 2006 UTC (15 years, 10 months ago) by jgs
adjustments to includes to allow for new paso src tree structure
Revision 464 - Directory Listing
Modified Wed Jan 25 00:42:41 2006 UTC (15 years, 10 months ago) by gross
typo fixed: the anisotropic problems are returneing the correct answer now.
Revision 461 - Directory Listing
Modified Wed Jan 25 00:01:12 2006 UTC (15 years, 10 months ago) by gross
systems benchmarks run now
Revision 460 - Directory Listing
Modified Tue Jan 24 07:53:39 2006 UTC (15 years, 10 months ago) by gross
some mopre problems added
Revision 459 - Directory Listing
Modified Tue Jan 24 07:51:02 2006 UTC (15 years, 10 months ago) by gross
some mopre problems added
Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (15 years, 10 months ago) by jgs
fix installation to directories specified by pyinstall and libinstall
Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (15 years, 10 months ago) by jgs
minor comment and formatting changes
Revision 454 - Directory Listing
Modified Tue Jan 24 01:34:31 2006 UTC (15 years, 10 months ago) by jgs
replace libdir default settings - SConstruct was broken without them
Revision 453 - Directory Listing
Modified Tue Jan 24 01:23:28 2006 UTC (15 years, 10 months ago) by gross
reset the solver
Revision 452 - Directory Listing
Modified Mon Jan 23 23:48:50 2006 UTC (15 years, 10 months ago) by gross
iter_max increased
Revision 450 - Directory Listing
Modified Mon Jan 23 05:04:45 2006 UTC (15 years, 10 months ago) by jgs
remove old make based build system
Revision 449 - Directory Listing
Modified Mon Jan 23 03:48:51 2006 UTC (15 years, 10 months ago) by jgs
finley source directories now merged into one directory: src/finley
Revision 448 - Directory Listing
Modified Mon Jan 23 03:04:06 2006 UTC (15 years, 10 months ago) by gross
small typy fixed
Revision 447 - Directory Listing
Modified Mon Jan 23 02:59:59 2006 UTC (15 years, 10 months ago) by gross
a simple linear elastic solver
Revision 446 - Directory Listing
Modified Mon Jan 23 00:36:07 2006 UTC (15 years, 10 months ago) by gross
typo fixed
Revision 443 - Directory Listing
Modified Fri Jan 20 06:22:38 2006 UTC (15 years, 10 months ago) by gross
L2 function added
Revision 442 - Directory Listing
Modified Fri Jan 20 04:39:43 2006 UTC (15 years, 10 months ago) by gross
kronecker (and relatives) take now a FunctionSpace as argument and return a Data object in tthis functionspace
Revision 437 - Directory Listing
Modified Fri Jan 20 00:16:58 2006 UTC (15 years, 10 months ago) by gross
comprehensive testing for integrate function added. tests for grad will be added in the next check in. GradTest is obsolete now.
Revision 435 - Directory Listing
Modified Thu Jan 19 03:57:30 2006 UTC (15 years, 10 months ago) by gross
minor change
Revision 432 - Directory Listing
Modified Fri Jan 13 07:38:54 2006 UTC (15 years, 11 months ago) by gross
some fixes for openmp
Revision 431 - Directory Listing
Modified Fri Jan 13 05:07:10 2006 UTC (15 years, 11 months ago) by gross
new implementation of ILU0
Revision 430 - Directory Listing
Modified Wed Jan 11 06:40:50 2006 UTC (15 years, 11 months ago) by gross
ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.
Revision 428 - Directory Listing
Modified Wed Jan 11 01:38:16 2006 UTC (15 years, 11 months ago) by gross
interplotared is changed from method to function call
Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (15 years, 11 months ago) by gross
The sparse solver can be called by paso now. the building has been change to reduce some code redundancy: now all scons SCscripts are importing scons/esys_options.py which imports platform specific settings.
Revision 423 - Directory Listing
Modified Fri Jan 6 08:09:43 2006 UTC (15 years, 11 months ago) by gross
some modifications in visualization to get equidistant output
Revision 416 - Directory Listing
Modified Wed Jan 4 05:38:35 2006 UTC (15 years, 11 months ago) by gross
changes in Paso have been worked in
Revision 404 - Directory Listing
Modified Thu Dec 22 23:04:55 2005 UTC (15 years, 11 months ago) by gross
direct solver works for symmetry flag now
Revision 402 - Directory Listing
Modified Thu Dec 22 22:46:54 2005 UTC (15 years, 11 months ago) by gross
cut of for small values
Revision 399 - Directory Listing
Modified Wed Dec 21 22:43:48 2005 UTC (15 years, 11 months ago) by gross
frame to run a single test out of the test_util suite
Revision 389 - Directory Listing
Modified Tue Dec 20 03:17:28 2005 UTC (15 years, 11 months ago) by gross
Laplace benchmarks added
Revision 388 - Directory Listing
Modified Tue Dec 20 03:13:17 2005 UTC (15 years, 11 months ago) by gross
laplace benchmarks added
Revision 384 - Directory Listing
Modified Mon Dec 19 06:11:32 2005 UTC (15 years, 11 months ago) by gross
finleybench is build now
Revision 383 - Directory Listing
Modified Mon Dec 19 06:10:45 2005 UTC (15 years, 11 months ago) by gross
Finley options added plus some other stuff
Revision 382 - Directory Listing
Modified Mon Dec 19 06:09:49 2005 UTC (15 years, 11 months ago) by gross
run finley benchmark
Revision 381 - Directory Listing
Modified Mon Dec 19 03:15:44 2005 UTC (15 years, 11 months ago) by gross
first version of a finley benchmark suite for test the paso solver
Revision 362 - Directory Listing
Modified Thu Dec 15 02:07:55 2005 UTC (16 years ago) by jgs
removed unit-test runner scripts as unit-tests now run from scons
Revision 360 - Directory Listing
Modified Thu Dec 15 01:52:16 2005 UTC (16 years ago) by jgs
add target to run all unit tests, the build will fail for this target if any unit test fails
Revision 355 - Directory Listing
Modified Wed Dec 14 05:05:31 2005 UTC (16 years ago) by jgs
add explicit target for building of unit tests
Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (16 years ago) by jgs
turns out Install() targets should also be made Default() targets if you want them to actually reliably work!
Revision 340 - Directory Listing
Modified Mon Dec 12 05:10:45 2005 UTC (16 years ago) by jgs
pass in pyinstall value from top-level scons script and add correct suffix in module level scons scipr
Revision 325 - Directory Listing
Modified Wed Dec 7 02:08:17 2005 UTC (16 years ago) by jgs
now determine hostname via socket.gethostname() as HOSTNAME environment variable is apparently not set on all platforms
Revision 324 - Directory Listing
Modified Wed Dec 7 01:10:36 2005 UTC (16 years ago) by jgs
add symlinks to include files - previously added by hand as cvs couldn't handle them
Revision 320 - Directory Listing
Modified Tue Dec 6 04:35:27 2005 UTC (16 years ago) by svn
unit tests now run ok
Revision 319 - Directory Listing
Modified Tue Dec 6 04:25:37 2005 UTC (16 years ago) by jgs
temporary unit tests scripts
Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (16 years ago) by jgs
now load default options - by default!
Revision 303 - Directory Listing
Modified Fri Dec 2 05:54:01 2005 UTC (16 years ago) by gross
is now in modellib
Revision 302 - Directory Listing
Modified Fri Dec 2 05:51:51 2005 UTC (16 years ago) by gross
runs again
Revision 301 - Directory Listing
Modified Fri Dec 2 05:49:29 2005 UTC (16 years ago) by gross
runs again
Revision 300 - Directory Listing
Modified Fri Dec 2 05:47:17 2005 UTC (16 years ago) by gross
runs again
Revision 299 - Directory Listing
Modified Fri Dec 2 05:45:38 2005 UTC (16 years ago) by gross
runs again
Revision 298 - Directory Listing
Modified Fri Dec 2 05:42:11 2005 UTC (16 years ago) by gross
runs again
Revision 296 - Directory Listing
Modified Fri Dec 2 03:55:36 2005 UTC (16 years ago) by gross
test passes now
Revision 294 - Directory Listing
Modified Fri Dec 2 03:47:30 2005 UTC (16 years ago) by gross
test of symbols.py with python
Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (16 years ago) by jgs
now automatically build unit tests as required based on dependencies between unit tests and libraries
Revision 284 - Directory Listing
Modified Thu Dec 1 06:39:23 2005 UTC (16 years ago) by gross
test are passed now
Revision 277 - Directory Listing
Modified Wed Nov 30 04:52:39 2005 UTC (16 years ago) by jgs
explicitly define dependencies between modules
Revision 273 - Directory Listing
Modified Wed Nov 30 03:30:40 2005 UTC (16 years ago) by gross
cast to float added. this avoids problems with very small values
Revision 272 - Directory Listing
Modified Wed Nov 30 03:30:30 2005 UTC (16 years ago) by gross
cast to float added. this avoids problems with very small coodinates.
Revision 271 - Directory Listing
Modified Wed Nov 30 03:27:30 2005 UTC (16 years ago) by gross
cast to float added. this avoids problems with very small values
Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (16 years ago) by jgs
setup scons configuration to make and install python code
Revision 255 - Directory Listing
Modified Tue Nov 29 06:13:22 2005 UTC (16 years ago) by jgs
pass in solver libraries to link with via options files now
Revision 252 - Directory Listing
Modified Tue Nov 29 05:58:03 2005 UTC (16 years ago) by jgs
pass in platform specific libraries via options files now
Revision 249 - Directory Listing
Modified Tue Nov 29 05:29:09 2005 UTC (16 years ago) by jgs
fix compiler options to enable compilation on gcc platforms
Revision 248 - Directory Listing
Modified Tue Nov 29 04:58:23 2005 UTC (16 years ago) by jgs
add top level scons config files to allow building of all unit tests for each module at once
Revision 246 - Directory Listing
Modified Tue Nov 29 04:27:00 2005 UTC (16 years ago) by jgs
allow compile options to be loaded from a config file specified on the command line to scons
Revision 241 - Directory Listing
Modified Mon Nov 28 06:14:47 2005 UTC (16 years ago) by jgs
if usegcc=1 is set on command line, load compiler options fropm scons/gcc_options.py
Revision 239 - Directory Listing
Modified Mon Nov 28 05:49:32 2005 UTC (16 years ago) by jgs
read names of python and boost libraries from config file now
Revision 228 - Directory Listing
Modified Fri Nov 25 02:01:14 2005 UTC (16 years ago) by jgs
now read compile options from options file
Revision 224 - Directory Listing
Modified Fri Nov 25 00:33:27 2005 UTC (16 years ago) by jgs
implement switching of debug compiler options based on command line flag 'debug'
Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (16 years ago) by jgs
pass in cc/cxx settings from config file
Revision 217 - Directory Listing
Modified Thu Nov 24 06:48:50 2005 UTC (16 years ago) by jgs
import sys
Revision 216 - Directory Listing
Modified Thu Nov 24 06:35:14 2005 UTC (16 years ago) by jgs
first pass at importing compile options from an external file'
Revision 214 - Directory Listing
Modified Thu Nov 24 05:15:26 2005 UTC (16 years ago) by jgs
collect all information needed to determine build configuration (ie: debug/nodebug, host, platform etc)
Revision 206 - Directory Listing
Modified Wed Nov 23 05:03:42 2005 UTC (16 years ago) by jgs
remove MeshAdapter test for now - will only work with scons build system
Revision 205 - Directory Listing
Modified Wed Nov 23 05:02:59 2005 UTC (16 years ago) by jgs
fix settings to account for new finley source tree structure
Revision 204 - Directory Listing
Modified Wed Nov 23 04:43:51 2005 UTC (16 years ago) by jgs
revised scons files to account for new finley source tree structure
Revision 203 - Directory Listing
Modified Wed Nov 23 04:36:15 2005 UTC (16 years ago) by jgs
adjust include file names to allow for new finley source tree structure
Revision 202 - Directory Listing
Modified Wed Nov 23 04:18:39 2005 UTC (16 years ago) by jgs
scons builds will now take place in parallel "finley" src dir
Revision 201 - Directory Listing
Modified Wed Nov 23 04:10:21 2005 UTC (16 years ago) by jgs
copy finleyC and CPPAdapter to finley and finley/CPPAdapter to facilitate scons builds
Revision 192 - Directory Listing
Modified Mon Nov 21 04:52:14 2005 UTC (16 years ago) by jgs
pass in top level install directory for finley/escript/bruce/paso libraries when building via top level scons script
Revision 191 - Directory Listing
Modified Mon Nov 21 04:10:12 2005 UTC (16 years ago) by jgs
push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files
Revision 190 - Directory Listing
Modified Mon Nov 21 03:27:42 2005 UTC (16 years ago) by jgs
pass in value for esysroot and use this to determine include file locations
Revision 188 - Directory Listing
Modified Mon Nov 21 01:20:26 2005 UTC (16 years ago) by jgs
explicitly add -fpic option to all compiler options lists to ensure relocatable code is generated
Revision 183 - Directory Listing
Modified Fri Nov 18 05:24:37 2005 UTC (16 years ago) by jgs
can now build finleyC/finleycpp concurrently
Revision 182 - Directory Listing
Modified Fri Nov 18 05:07:36 2005 UTC (16 years ago) by jgs
first draft of config/construct files for finleyC/finleycpp libraries
Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (16 years, 1 month ago) by jgs
Copied from: trunk/esys2/finley revision 154
move all directories from trunk/esys2 into trunk and remove esys2
Revision 154 - Directory Listing
Modified Mon Nov 7 05:51:17 2005 UTC (16 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-11-07
Revision 153 - Directory Listing
Modified Tue Oct 25 01:51:20 2005 UTC (16 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-10-25
Revision 152 - Directory Listing
Modified Fri Oct 21 08:32:21 2005 UTC (16 years, 1 month ago) by phornby
Original Path: trunk/esys2/finley
DataConstantTestCase.cpp, DataExpandedTestCase.cpp: Replace DataExpanded testData1(FunctionSpace(),....) with FunctionSpace tmp_fns; DataExpanded testData1(tmp_fns,shape,data); for GCC's sake. Added some profiling to PoissonSolverTest.py.
Revision 151 - Directory Listing
Modified Thu Sep 22 01:55:00 2005 UTC (16 years, 2 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-22
Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (16 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-15
Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (16 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-01
Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (16 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-08-23
Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
erge of development branch dev-02 back to main trunk on 2005-08-12
Revision 146 - Directory Listing
Modified Fri Jul 29 01:44:29 2005 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
First merge of development branch dev-02 back to main trunk on 2005-07-29
Revision 141 - Directory Listing
Modified Mon Jul 25 05:15:41 2005 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
fixed to work with new python source/install directory structure
Revision 126 - Directory Listing
Modified Fri Jul 22 03:53:08 2005 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch back to main trunk on 2005-07-22
Revision 123 - Directory Listing
Modified Fri Jul 8 04:08:13 2005 UTC (16 years, 5 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch back to main trunk on 2005-07-08
Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (16 years, 6 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch back to main trunk on 2005-06-09
Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (16 years, 7 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch back to main trunk on 2005-05-06
Ioerror: Can't Prepare for Writing Data (File Write Failed: Time = Mon Apr 29 15:08:41 2019
Source: https://svn.geocomp.uq.edu.au/escript/trunk/finley/?diff_format=f&view=log&sortby=log&pathrev=6359
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